GenomeNet

Database: UniProt
Entry: C3YQY9_BRAFL
LinkDB: C3YQY9_BRAFL
Original site: C3YQY9_BRAFL 
ID   C3YQY9_BRAFL            Unreviewed;       328 AA.
AC   C3YQY9;
DT   28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT   28-JUL-2009, sequence version 1.
DT   03-MAY-2023, entry version 65.
DE   RecName: Full=IF rod domain-containing protein {ECO:0000259|PROSITE:PS51842};
GN   ORFNames=BRAFLDRAFT_81360 {ECO:0000313|EMBL:EEN57330.1};
OS   Branchiostoma floridae (Florida lancelet) (Amphioxus).
OC   Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes;
OC   Branchiostomatidae; Branchiostoma.
OX   NCBI_TaxID=7739;
RN   [1] {ECO:0000313|EMBL:EEN57330.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=S238N-H82 {ECO:0000313|EMBL:EEN57330.1};
RC   TISSUE=Testes {ECO:0000313|EMBL:EEN57330.1};
RX   PubMed=18563158; DOI=10.1038/nature06967;
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U.,
RA   Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K.,
RA   Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J.,
RA   Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J., Kapitonov V.V.,
RA   Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A.,
RA   Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T.,
RA   Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W.H.,
RA   Satoh N., Rokhsar D.S.;
RT   "The amphioxus genome and the evolution of the chordate karyotype.";
RL   Nature 453:1064-1071(2008).
CC   -!- SIMILARITY: Belongs to the intermediate filament family.
CC       {ECO:0000256|RuleBase:RU000685}.
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DR   EMBL; GG666544; EEN57330.1; -; Genomic_DNA.
DR   RefSeq; XP_002601318.1; XM_002601272.1.
DR   AlphaFoldDB; C3YQY9; -.
DR   InParanoid; C3YQY9; -.
DR   GO; GO:0005882; C:intermediate filament; IEA:UniProtKB-KW.
DR   Gene3D; 1.20.5.170; -; 1.
DR   Gene3D; 1.20.5.500; Single helix bin; 1.
DR   Gene3D; 1.20.5.1160; Vasodilator-stimulated phosphoprotein; 1.
DR   InterPro; IPR018039; IF_conserved.
DR   InterPro; IPR039008; IF_rod_dom.
DR   PANTHER; PTHR45652; GLIAL FIBRILLARY ACIDIC PROTEIN; 1.
DR   PANTHER; PTHR45652:SF17; IF ROD DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF00038; Filament; 1.
DR   SMART; SM01391; Filament; 1.
DR   SUPFAM; SSF64593; Intermediate filament protein, coiled coil region; 2.
DR   PROSITE; PS00226; IF_ROD_1; 1.
DR   PROSITE; PS51842; IF_ROD_2; 1.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW   Intermediate filament {ECO:0000256|ARBA:ARBA00022754,
KW   ECO:0000256|RuleBase:RU000685}.
FT   DOMAIN          13..324
FT                   /note="IF rod"
FT                   /evidence="ECO:0000259|PROSITE:PS51842"
FT   COILED          24..98
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COILED          222..288
FT                   /evidence="ECO:0000256|SAM:Coils"
SQ   SEQUENCE   328 AA;  36644 MW;  C81E21E5A9BE4586 CRC64;
     MATQLAKMTR TAEKKQLSAL NGQFASYIEK VQALNQSNAA LESQLQAVQA KAAPVEKGKY
     EGMLSALRAQ VDGLSQQKAQ LEVERNSWQS QAEEWQGKCE EQYSVRSGLK AEIQQNKMEL
     EIINAARSGF ESRLVAAQGE IEAVNKNNSA GIAALREELA RTVTAIEAKQ AAVTGPDLSN
     TLREIREQYE VVGQANRQDA EAKYREKFAE IALQRQKDSD ALAAARAEVA EFQKKIDTLR
     AEAESIRSKN IAMEDGMNQT ETRIQKEMES YRQAIAKREA QIEQMKLETA QNLTNYQELM
     NVKMALDLEI AAYRKLLEGE EIRLLGQA
//
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