ID   C3YTQ7_BRAFL            Unreviewed;       441 AA.
AC   C3YTQ7;
DT   28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT   28-JUL-2009, sequence version 1.
DT   27-MAR-2024, entry version 56.
DE   SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEN56184.1};
GN   ORFNames=BRAFLDRAFT_66680 {ECO:0000313|EMBL:EEN56184.1};
OS   Branchiostoma floridae (Florida lancelet) (Amphioxus).
OC   Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes;
OC   Branchiostomatidae; Branchiostoma.
OX   NCBI_TaxID=7739;
RN   [1] {ECO:0000313|EMBL:EEN56184.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=S238N-H82 {ECO:0000313|EMBL:EEN56184.1};
RC   TISSUE=Testes {ECO:0000313|EMBL:EEN56184.1};
RX   PubMed=18563158; DOI=10.1038/nature06967;
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U.,
RA   Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K.,
RA   Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J.,
RA   Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J., Kapitonov V.V.,
RA   Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A.,
RA   Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T.,
RA   Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W.H.,
RA   Satoh N., Rokhsar D.S.;
RT   "The amphioxus genome and the evolution of the chordate karyotype.";
RL   Nature 453:1064-1071(2008).
CC   -!- SIMILARITY: Belongs to the CAF1 family.
CC       {ECO:0000256|ARBA:ARBA00008372}.
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DR   EMBL; GG666552; EEN56184.1; -; Genomic_DNA.
DR   RefSeq; XP_002600172.1; XM_002600126.1.
DR   AlphaFoldDB; C3YTQ7; -.
DR   STRING; 7739.C3YTQ7; -.
DR   eggNOG; KOG1990; Eukaryota.
DR   InParanoid; C3YTQ7; -.
DR   GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR   GO; GO:0005783; C:endoplasmic reticulum; IBA:GO_Central.
DR   GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR   GO; GO:0004535; F:poly(A)-specific ribonuclease activity; IBA:GO_Central.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; IBA:GO_Central.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 2.
DR   InterPro; IPR006941; RNase_CAF1.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR036397; RNaseH_sf.
DR   PANTHER; PTHR15092; POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1; 1.
DR   PANTHER; PTHR15092:SF49; POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1; 1.
DR   Pfam; PF04857; CAF1; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|SAM:Coils}; Membrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM        419..437
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   COILED          152..179
FT                   /evidence="ECO:0000256|SAM:Coils"
SQ   SEQUENCE   441 AA;  50285 MW;  E9B7815DCEF0E21E CRC64;
     MCDVKRDEFL QLLPDIKQKI QDCDFVACLT PPRSGTGSSD RRSAVLSSVK SASSFEFLCD
     HNFDFNEFVY EGVPYLDQDQ EKHLRKHLEQ TSWPTAGGSQ QDQVQLCCST VSQWLSNGGD
     TELNIPSPKG PSRFLIHRAL RTRFPEVWTY DAANSQLAVR KVSEEKRKEE EEKDDLADRA
     LDYMLGFSHV FRTLTQTRKP VVGHNMLMDL MLLYGKMYKP LPEKYDQFKR DIHVLFPCIY
     DTKHIAAELK KPLAEFGVLQ SSILQELYDA LNSHKGRFMV LHSPAVVPAA ECDRYTNESH
     PHEAGYDSYM AGYVFIRMSH LQTMQGISAQ QPVPPRFRRY LEVMRRFQDK VNIIRASIDH
     ICLSGDDPVS RRPQWLYVTL APSRAATINS AQIAELFSPY GSVDIRPLDG SHFLVAAHSF
     YWTSISVSIL GIAWTFLGKS S
//