ID C3YTU5_BRAFL Unreviewed; 863 AA.
AC C3YTU5;
DT 28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT 28-JUL-2009, sequence version 1.
DT 27-MAR-2024, entry version 69.
DE RecName: Full=C2H2-type domain-containing protein {ECO:0000259|PROSITE:PS50157};
GN ORFNames=BRAFLDRAFT_66715 {ECO:0000313|EMBL:EEN56222.1};
OS Branchiostoma floridae (Florida lancelet) (Amphioxus).
OC Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes;
OC Branchiostomatidae; Branchiostoma.
OX NCBI_TaxID=7739;
RN [1] {ECO:0000313|EMBL:EEN56222.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=S238N-H82 {ECO:0000313|EMBL:EEN56222.1};
RC TISSUE=Testes {ECO:0000313|EMBL:EEN56222.1};
RX PubMed=18563158; DOI=10.1038/nature06967;
RG US DOE Joint Genome Institute (JGI-PGF);
RA Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U.,
RA Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K.,
RA Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J.,
RA Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J., Kapitonov V.V.,
RA Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A.,
RA Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T.,
RA Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W.H.,
RA Satoh N., Rokhsar D.S.;
RT "The amphioxus genome and the evolution of the chordate karyotype.";
RL Nature 453:1064-1071(2008).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; GG666552; EEN56222.1; -; Genomic_DNA.
DR RefSeq; XP_002600210.1; XM_002600164.1.
DR AlphaFoldDB; C3YTU5; -.
DR eggNOG; KOG1721; Eukaryota.
DR InParanoid; C3YTU5; -.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0000977; F:RNA polymerase II transcription regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 3.30.160.60; Classic Zinc Finger; 21.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR InterPro; IPR013087; Znf_C2H2_type.
DR PANTHER; PTHR24392:SF56; OOCYTE ZINC FINGER PROTEIN XLCOF6-LIKE-RELATED; 1.
DR PANTHER; PTHR24392; ZINC FINGER PROTEIN; 1.
DR Pfam; PF00096; zf-C2H2; 8.
DR Pfam; PF13909; zf-H2C2_5; 1.
DR SMART; SM00355; ZnF_C2H2; 21.
DR SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 12.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 19.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00042}.
FT DOMAIN 52..79
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 80..107
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 108..135
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 136..163
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 164..191
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 192..219
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 286..313
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 314..341
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 342..369
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 370..397
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 398..425
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 574..603
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 604..631
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 657..684
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 685..712
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 713..740
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 741..769
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 770..797
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 798..825
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT REGION 1..40
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 255..281
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 24..39
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 258..273
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 863 AA; 98513 MW; 41A5ECB477211658 CRC64;
MTRKRTSQRL TKEKKGVSSI PPDRKASSRR NTQARTGRSN RCVAEGVKGT LHVCEECGFK
AAYKSHLSRH LRKHTGERPY KCDQCEFSAT QKYNLDQHKL RHSGEKPYIC GECGYRTAHK
SSISVHMRIH TGSKPYKCNQ CDYSAAQKNN VKQHMLKHSS EKPYICGECG YRASRKSYVT
AHIRRQTCRK PFQCDICDFR ATLKGHLDQH MAEHMSESPF MYEENGCSAD LSRQCNHSTA
MKIRFKQHMA NHTNAKPFMR GKGKKRTVGR PSRTKSTKNH TDDKVYKCDQ CDYSAKQKLR
LDVHKAKHTG DIPYVCGECG YSTADKSCLY RHMRKHTGEK PYRCDLCDYS SAHRISLVQH
MAEHTGVKPY KCEECGYRTA VSCNLSRHMA RHTGQKAYMC GECGYRTVNS DHLKVHMRKH
TGEKPYKCEQ CDFSSARKGS GRSFYPNLRR FSGRFNVFST HQPKQNKEME EKSRQLSVDK
LPAVYIHPGS ETTNSGDTDT GRWQDNEEDI PCEETCWEKP AHSLVLQGQT EQTDRLAVKR
TSDKLFSSAE GAYEAAPKSK VSKHARIDAG KKPYKCDQCG YCATHIWQLE RHMAKHSDAG
DTPYKCEECG LRTADESYLS KHIRTHTGKK PFKCDQCDYS ATQKEDLALK HNREKPFMCG
ECGFKAVGKP ELYKHMRMHP GVKPYKCDQC DYSAEYKSIL GRHMVIHTGD KPYMCGECGY
RTADKSALTK HMRTHTGEKP FKCDQCDYSA IQKGQLDRHV LSRHTGEKPY MCGECGYRTS
DKSCLSKHMR KHTGEKPLMC GECGYRAADR SELSRHAKTH PGAKSYKCDQ CNYVAKLDMW
PNTPVRNPTC VGNVGTEQLT GLL
//
