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Database: UniProt
Entry: C3YWH3_BRAFL
LinkDB: C3YWH3_BRAFL
Original site: C3YWH3_BRAFL 
ID   C3YWH3_BRAFL            Unreviewed;       840 AA.
AC   C3YWH3;
DT   28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT   28-JUL-2009, sequence version 1.
DT   08-MAY-2019, entry version 52.
DE   SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEN55217.1};
GN   ORFNames=BRAFLDRAFT_64442 {ECO:0000313|EMBL:EEN55217.1};
OS   Branchiostoma floridae (Florida lancelet) (Amphioxus).
OC   Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae;
OC   Branchiostoma.
OX   NCBI_TaxID=7739 {ECO:0000313|Proteomes:UP000001554};
RN   [1] {ECO:0000313|EMBL:EEN55217.1, ECO:0000313|Proteomes:UP000001554}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=S238N-H82 {ECO:0000313|EMBL:EEN55217.1,
RC   ECO:0000313|Proteomes:UP000001554};
RC   TISSUE=Testes {ECO:0000313|EMBL:EEN55217.1};
RX   PubMed=18563158; DOI=10.1038/nature06967;
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U.,
RA   Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K.,
RA   Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J.,
RA   Gibson-Brown J.J., Grigoriev I.V., Horton A.C., de Jong P.J.,
RA   Jurka J., Kapitonov V.V., Kohara Y., Kuroki Y., Lindquist E.,
RA   Lucas S., Osoegawa K., Pennacchio L.A., Salamov A.A., Satou Y.,
RA   Sauka-Spengler T., Schmutz J., Shin-I T., Toyoda A.,
RA   Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W.H.,
RA   Satoh N., Rokhsar D.S.;
RT   "The amphioxus genome and the evolution of the chordate karyotype.";
RL   Nature 453:1064-1071(2008).
CC   -!- SIMILARITY: Belongs to the ligand-gated ion channel (TC 1.A.9)
CC       family. {ECO:0000256|SAAS:SAAS00978283}.
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DR   EMBL; GG666561; EEN55217.1; -; Genomic_DNA.
DR   RefSeq; XP_002599205.1; XM_002599159.1.
DR   GeneID; 7211166; -.
DR   KEGG; bfo:BRAFLDRAFT_64442; -.
DR   eggNOG; KOG3644; Eukaryota.
DR   eggNOG; ENOG410Y1WB; LUCA.
DR   InParanoid; C3YWH3; -.
DR   OMA; LCQDEDS; -.
DR   OrthoDB; 1290238at2759; -.
DR   Proteomes; UP000001554; Partially assembled WGS sequence.
DR   GO; GO:0005887; C:integral component of plasma membrane; IBA:GO_Central.
DR   GO; GO:0043005; C:neuron projection; IBA:GO_Central.
DR   GO; GO:0045202; C:synapse; IBA:GO_Central.
DR   GO; GO:0005230; F:extracellular ligand-gated ion channel activity; IEA:InterPro.
DR   GO; GO:0004888; F:transmembrane signaling receptor activity; IEA:InterPro.
DR   GO; GO:0007268; P:chemical synaptic transmission; IBA:GO_Central.
DR   GO; GO:0034220; P:ion transmembrane transport; IBA:GO_Central.
DR   GO; GO:0050877; P:nervous system process; IBA:GO_Central.
DR   GO; GO:0042391; P:regulation of membrane potential; IBA:GO_Central.
DR   GO; GO:0007165; P:signal transduction; IBA:GO_Central.
DR   Gene3D; 2.70.170.10; -; 2.
DR   InterPro; IPR006202; Neur_chan_lig-bd.
DR   InterPro; IPR036734; Neur_chan_lig-bd_sf.
DR   InterPro; IPR006201; Neur_channel.
DR   InterPro; IPR036719; Neuro-gated_channel_TM_sf.
DR   PANTHER; PTHR18945; PTHR18945; 2.
DR   Pfam; PF02931; Neur_chan_LBD; 2.
DR   SUPFAM; SSF63712; SSF63712; 2.
DR   SUPFAM; SSF90112; SSF90112; 2.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001554};
KW   Membrane {ECO:0000256|SAAS:SAAS00978300, ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001554};
KW   Transmembrane {ECO:0000256|SAAS:SAAS00978734,
KW   ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAAS:SAAS00978768,
KW   ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    272    292       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    304    324       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    336    353       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    365    388       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    631    651       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    663    683       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    695    717       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    723    745       Helical. {ECO:0000256|SAM:Phobius}.
FT   DOMAIN       81    269       Neur_chan_LBD. {ECO:0000259|Pfam:
FT                                PF02931}.
FT   DOMAIN      442    629       Neur_chan_LBD. {ECO:0000259|Pfam:
FT                                PF02931}.
FT   COILED      415    435       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   840 AA;  96633 MW;  17B64E9737A0A6DF CRC64;
     MYQQRRLAVH VSTETYSRLQ CTGDLWRFIC ELQDDKGCTP VTFVPQMETQ LVVERLTEAV
     DVLKQVESNL RTSSDEVWHK RRPDGRKIRV LIRASIISLG EIDTVKQEFS ADVWLAAWYK
     EPLLKGKKHR EEVDWDDQWD PRIVLFNAVS IDSHVKKHHL ILEEGDDVPI VQQSNRIKAT
     FKEPMELFDF PFDHQELTIQ LMSDWPIAQV EFGKNMGIKD TIRIDTFTGS HEWELYGHLL
     CKAHITGQHQ STSHQRYPLY DITAHVQRKM GFYVWNIAFI MFLIMALSFT AFSVPPDEPA
     DRLSVTLTLL LTSVAFKFVV TQSLPTISYL TLLDKYVLLC MIFQCLMAVQ NALASIMSNA
     WLFDVISMAV LAGIVFFTHL VFGVLMFIKI RGTNKRLGQA DKEYLMATQE ATDSLNETVK
     LLAKVETNLR KSKDEVWHIK RTDNRKVRVL VRPSIITLGE IDTVRQEFSA DLWFGVWYEE
     PELKGKKRRE EVVWQDQWAP RVDLFNAVKV DKHERKYDLI IRKEDGMPIV MISNRVQATF
     KDKMDLRSFP FDYQNLTIRL MSNWPSSQVE FAKNMAHKDT IRTDNFVGSQ QWKVYKHLLC
     QPGATALDQG TSQRQYPLYN ITMHVQRKMG FYVWNIALVE FLIMLLSFTA FCVPHDKPWS
     RLNVSLTLLL TSVAFKSVVT QNLPKISYLT LLDKYVLFCM IFQGLMVAQN ALASVYPHTF
     DEISKAVMAV VIVLAHFLFG GYALIQICCT RTLLEGVGDE YLDLCRDIKE YYQKINSTLD
     SSGFTDEDAR AIHSPRKNGV KRLGQGLLKE NGMDAIASFT GVCRALAKVP FVGVRTAASN
//
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