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Database: UniProt
Entry: C3ZE76_BRAFL
LinkDB: C3ZE76_BRAFL
Original site: C3ZE76_BRAFL 
ID   C3ZE76_BRAFL            Unreviewed;       289 AA.
AC   C3ZE76;
DT   28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT   28-JUL-2009, sequence version 1.
DT   24-JAN-2024, entry version 69.
DE   RecName: Full=HMG box domain-containing protein {ECO:0000259|PROSITE:PS50118};
DE   Flags: Fragment;
GN   ORFNames=BRAFLDRAFT_212685 {ECO:0000313|EMBL:EEN49032.1};
OS   Branchiostoma floridae (Florida lancelet) (Amphioxus).
OC   Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes;
OC   Branchiostomatidae; Branchiostoma.
OX   NCBI_TaxID=7739;
RN   [1] {ECO:0000313|EMBL:EEN49032.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=S238N-H82 {ECO:0000313|EMBL:EEN49032.1};
RC   TISSUE=Testes {ECO:0000313|EMBL:EEN49032.1};
RX   PubMed=18563158; DOI=10.1038/nature06967;
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U.,
RA   Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K.,
RA   Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J.,
RA   Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J., Kapitonov V.V.,
RA   Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A.,
RA   Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T.,
RA   Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W.H.,
RA   Satoh N., Rokhsar D.S.;
RT   "The amphioxus genome and the evolution of the chordate karyotype.";
RL   Nature 453:1064-1071(2008).
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DR   EMBL; GG666612; EEN49032.1; -; Genomic_DNA.
DR   RefSeq; XP_002593021.1; XM_002592975.1.
DR   AlphaFoldDB; C3ZE76; -.
DR   STRING; 7739.C3ZE76; -.
DR   eggNOG; KOG0527; Eukaryota.
DR   InParanoid; C3ZE76; -.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR   GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR   GO; GO:0009653; P:anatomical structure morphogenesis; IBA:GO_Central.
DR   GO; GO:0030154; P:cell differentiation; IBA:GO_Central.
DR   GO; GO:0006355; P:regulation of DNA-templated transcription; IBA:GO_Central.
DR   CDD; cd01388; HMG-box_SoxB; 1.
DR   Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR   InterPro; IPR009071; HMG_box_dom.
DR   InterPro; IPR036910; HMG_box_dom_sf.
DR   InterPro; IPR022097; SOX_fam.
DR   PANTHER; PTHR10270:SF161; SOX DOMAIN-CONTAINING PROTEIN DICHAETE-RELATED; 1.
DR   PANTHER; PTHR10270; SOX TRANSCRIPTION FACTOR; 1.
DR   Pfam; PF00505; HMG_box; 1.
DR   Pfam; PF12336; SOXp; 1.
DR   SMART; SM00398; HMG; 1.
DR   SUPFAM; SSF47095; HMG-box; 1.
DR   PROSITE; PS50118; HMG_BOX_2; 1.
PE   4: Predicted;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PROSITE-
KW   ProRule:PRU00267}; Nucleus {ECO:0000256|PROSITE-ProRule:PRU00267}.
FT   DOMAIN          11..79
FT                   /note="HMG box"
FT                   /evidence="ECO:0000259|PROSITE:PS50118"
FT   DNA_BIND        11..79
FT                   /note="HMG box"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT   REGION          221..244
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   NON_TER         1
FT                   /evidence="ECO:0000313|EMBL:EEN49032.1"
SQ   SEQUENCE   289 AA;  32142 MW;  90AC8C66E993DFD1 CRC64;
     GNKAANDSSR VKRPMNAFMV WSRGQRRKMA QENPKMHNSE ISKRLGAEWK LLTEAEKRPF
     IDEAKRLRAL HMKEHPDYKY RPRRKTKTLM KKDKYSLPGG LIAANGAPVQ RTIATGMDQY
     AHMNGYMSNN AYTHMMHQDQ LHAYPHPGIS PAQTASQMAS NASLPPRYDM SGQIPPYPMA
     TTNSYSSYTS SSYTTNPYSH HYTTPQTMSS QMPPGFTTVK TEAGPAAPTG TPPADGRGRN
     PCPGDLREMI SMYLPGDAND PNAQSRLHSM QGHYQNSVGV NGTVPLSHM
//
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