ID C3ZLB6_BRAFL Unreviewed; 637 AA.
AC C3ZLB6;
DT 28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT 28-JUL-2009, sequence version 1.
DT 27-MAR-2024, entry version 74.
DE RecName: Full=RRM domain-containing protein {ECO:0000259|PROSITE:PS50102};
GN ORFNames=BRAFLDRAFT_218629 {ECO:0000313|EMBL:EEN46798.1};
OS Branchiostoma floridae (Florida lancelet) (Amphioxus).
OC Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes;
OC Branchiostomatidae; Branchiostoma.
OX NCBI_TaxID=7739;
RN [1] {ECO:0000313|EMBL:EEN46798.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=S238N-H82 {ECO:0000313|EMBL:EEN46798.1};
RC TISSUE=Testes {ECO:0000313|EMBL:EEN46798.1};
RX PubMed=18563158; DOI=10.1038/nature06967;
RG US DOE Joint Genome Institute (JGI-PGF);
RA Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U.,
RA Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K.,
RA Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J.,
RA Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J., Kapitonov V.V.,
RA Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A.,
RA Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T.,
RA Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W.H.,
RA Satoh N., Rokhsar D.S.;
RT "The amphioxus genome and the evolution of the chordate karyotype.";
RL Nature 453:1064-1071(2008).
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
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DR EMBL; GG666640; EEN46798.1; -; Genomic_DNA.
DR RefSeq; XP_002590787.1; XM_002590741.1.
DR AlphaFoldDB; C3ZLB6; -.
DR STRING; 7739.C3ZLB6; -.
DR eggNOG; KOG0117; Eukaryota.
DR InParanoid; C3ZLB6; -.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:1990904; C:ribonucleoprotein complex; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR CDD; cd12249; RRM1_hnRNPR_like; 1.
DR CDD; cd12250; RRM2_hnRNPR_like; 1.
DR CDD; cd12251; RRM3_hnRNPR_like; 1.
DR Gene3D; 3.30.70.330; -; 3.
DR InterPro; IPR041337; hnRNP_Q_AcD.
DR InterPro; IPR006535; HnRNP_R/Q_splicing_fac.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR NCBIfam; TIGR01648; hnRNP-R-Q; 1.
DR PANTHER; PTHR21245; HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN; 1.
DR PANTHER; PTHR21245:SF10; SYNCRIP, ISOFORM Q; 1.
DR Pfam; PF18360; hnRNP_Q_AcD; 1.
DR Pfam; PF00076; RRM_1; 3.
DR SMART; SM00360; RRM; 3.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 3.
DR PROSITE; PS50102; RRM; 3.
PE 4: Predicted;
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}.
FT DOMAIN 154..233
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 235..318
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 331..401
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 1..48
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 101..121
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 392..423
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 507..637
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 14..36
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 400..420
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 582..637
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 637 AA; 70508 MW; 42B525F11C78B59E CRC64;
MSAEGEDQPQ AMEETEQQEP METSQSGDQG LPQSVQDALN KMYEEGVLSP EDLDERALDA
LREFDESGAH DVLKQFAESD LSHVQNKSAF LCGVMKTYRQ RNKNKQNQQG DASKKGPDET
KIKEILDRTG YKLDVTTGQR KYAMPPPCLV LLLAQVFVSK IPRDMFEDEL IPLFEKPGPI
FDLRLMMDPL SGQNRGYAFV TYTTKESAQD AVKQLDNYEI RKGRWLGVCI SVANNRLFVG
SIPKNKSKQE IFDEFGKVTN GLKDVIIYYM PEDKRKNRGF AFLEYLSHKE ASLARRRLMS
GRIKVWGNIT VTVDWADPIE EPDDEVMSKV KVLYVRNLAV EAAEEIIQAK FEPYGTVERV
KKIKDYAFVH FENREDAIKA MEDLNGKELE GSAMEISLAK PPSEKKKERK RQREQEKMMG
GYDYDGFGGG RGGPMRGRGR GGFDRRGRDY GGDYGYGGGY DDYGYGGYAE DYRGGYDDPY
YNDPYYGGGY DRYDDYGYGG GYGGRGGRGR GGPMGPPRGG MGPRGAPRGR AGFSPRGGAA
RGGRGGRGGT QQRGRGGRGG GRGGGTRGGA KRKADGQGNQ GPDTKRRANN QGGGQWQSAP
IAQQPLASQD WGGQGYSGGS SSGGQEWYQD SYGQQWK
//
