ID C3ZSP8_BRAFL Unreviewed; 592 AA.
AC C3ZSP8;
DT 28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT 28-JUL-2009, sequence version 1.
DT 27-MAR-2024, entry version 86.
DE RecName: Full=Transcription initiation factor TFIID subunit 5 {ECO:0000256|ARBA:ARBA00044130};
GN Name=LOC118404563 {ECO:0000313|RefSeq:XP_035659620.1};
GN ORFNames=BRAFLDRAFT_274913 {ECO:0000313|EMBL:EEN44450.1};
OS Branchiostoma floridae (Florida lancelet) (Amphioxus).
OC Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes;
OC Branchiostomatidae; Branchiostoma.
OX NCBI_TaxID=7739;
RN [1] {ECO:0000313|EMBL:EEN44450.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=S238N-H82 {ECO:0000313|EMBL:EEN44450.1};
RC TISSUE=Testes {ECO:0000313|EMBL:EEN44450.1};
RX PubMed=18563158; DOI=10.1038/nature06967;
RG US DOE Joint Genome Institute (JGI-PGF);
RA Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U.,
RA Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K.,
RA Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J.,
RA Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J., Kapitonov V.V.,
RA Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A.,
RA Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T.,
RA Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W.H.,
RA Satoh N., Rokhsar D.S.;
RT "The amphioxus genome and the evolution of the chordate karyotype.";
RL Nature 453:1064-1071(2008).
RN [2] {ECO:0000313|RefSeq:XP_035659620.1}
RP IDENTIFICATION.
RC STRAIN=S238N-H82 {ECO:0000313|RefSeq:XP_035659620.1};
RC TISSUE=Testes {ECO:0000313|RefSeq:XP_035659620.1};
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
CC -!- SIMILARITY: Belongs to the WD repeat TAF5 family.
CC {ECO:0000256|ARBA:ARBA00009435}.
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DR EMBL; GG666674; EEN44450.1; -; Genomic_DNA.
DR RefSeq; XP_002588439.1; XM_002588393.1.
DR RefSeq; XP_035659620.1; XM_035803727.1.
DR STRING; 7739.C3ZSP8; -.
DR KEGG; bfo:118404563; -.
DR eggNOG; KOG0263; Eukaryota.
DR InParanoid; C3ZSP8; -.
DR OMA; RTEHVQM; -.
DR OrthoDB; 3138699at2759; -.
DR Proteomes; UP000001554; Chromosome 17.
DR GO; GO:0005669; C:transcription factor TFIID complex; IBA:GO_Central.
DR GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IBA:GO_Central.
DR CDD; cd08044; TAF5_NTD2; 1.
DR CDD; cd00200; WD40; 1.
DR Gene3D; 1.25.40.500; TFIID subunit TAF5, NTD2 domain; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 3.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR006594; LisH.
DR InterPro; IPR007582; TFIID_NTD2.
DR InterPro; IPR037264; TFIID_NTD2_sf.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR19879:SF1; CANNONBALL-RELATED; 1.
DR PANTHER; PTHR19879; TRANSCRIPTION INITIATION FACTOR TFIID; 1.
DR Pfam; PF04494; TFIID_NTD2; 1.
DR Pfam; PF00400; WD40; 6.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 6.
DR SUPFAM; SSF160897; Taf5 N-terminal domain-like; 1.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS50896; LISH; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 3.
DR PROSITE; PS50082; WD_REPEATS_2; 5.
DR PROSITE; PS50294; WD_REPEATS_REGION; 5.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000001554};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}.
FT DOMAIN 66..196
FT /note="TFIID subunit TAF5 NTD2"
FT /evidence="ECO:0000259|Pfam:PF04494"
FT REPEAT 339..374
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 381..412
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 423..464
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 468..509
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 510..544
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
SQ SEQUENCE 592 AA; 66190 MW; 685D42C2E730BC64 CRC64;
MKRVKSEDIQ SAVLQYLKKR QYSDSDTTFK KEQKLSQTVS EMAVQGAVMS ESGVSTSFTF
SSCDPDPTLY EDQYSGLKVL IDDAPQAHQS ELTVLLYPMF VHLHLDLVCN GHRDAAEAFF
TRHHGNFLVD NMEWYELIEE LAGVMCKQDL FTKPKVKAFR ETKYAISLSD KAFQYLLRYL
QSDDNLILLR LFNTYLHVNV KPTQNGDLDL YSDKKGGAQE VTMATPPHTP DNKVQPGDVT
QVSLQDCIRR VREGTPYLSS VCLYTFHNTF QGLNTAAVSD DSRFVCGGFD DSTVKVWSGL
SRKLKAAHHT VDVSRINLAG DVLDDKVRED SVGQEVKHMR GHSGPVYGTS FLPNNTFLLT
SSEDTTVRLW NLSTFTNDVI YKGHSYPVWD IDTSPLGAYF VSCSQDRSAR LWALDRTFPL
RIFAGHSQDV DCVKFHPNCN YIATGSSDRT VRLWSVQDGK FVRIFHGKDG HKGTIFSLAF
SPDGKHLASA GEDNCVRVWD LTSGDMLKEL RAHTDSIYSI SYSRDGTMLA SAGGDSIVRV
WDMRPNIPDK ESDGQPPELL HSYPTKTSSL HMLKFAPSDL LIAAGTAKGD ST
//
