ID C4J3C8_MAIZE Unreviewed; 552 AA.
AC C4J3C8;
DT 07-JUL-2009, integrated into UniProtKB/TrEMBL.
DT 07-JUL-2009, sequence version 1.
DT 27-MAR-2024, entry version 89.
DE SubName: Full=Small RNA degrading nuclease 5 {ECO:0000313|EMBL:AQK39851.1};
GN Name=100383366 {ECO:0000313|EnsemblPlants:Zm00001eb409200_P001};
GN ORFNames=ZEAMMB73_Zm00001d023710 {ECO:0000313|EMBL:AQK39851.1};
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea.
OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACR35678.1};
RN [1] {ECO:0000313|EMBL:ACR35678.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=B73 {ECO:0000313|EMBL:ACR35678.1};
RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740;
RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J.,
RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., Fernandes J.,
RA Walbot V., Yu Y.;
RT "Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.";
RL PLoS Genet. 5:E1000740-E1000740(2009).
RN [2] {ECO:0000313|EnsemblPlants:Zm00001eb409200_P001, ECO:0000313|Proteomes:UP000007305}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb409200_P001,
RC ECO:0000313|Proteomes:UP000007305};
RX PubMed=19965430; DOI=10.1126/science.1178534;
RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S.,
RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D.,
RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K.,
RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., Abbott R.M.,
RA Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., Gillam B.,
RA Chen W., Yan L., Higginbotham J., Cardenas M., Waligorski J., Applebaum E.,
RA Phelps L., Falcone J., Kanchi K., Thane T., Scimone A., Thane N., Henke J.,
RA Wang T., Ruppert J., Shah N., Rotter K., Hodges J., Ingenthron E.,
RA Cordes M., Kohlberg S., Sgro J., Delgado B., Mead K., Chinwalla A.,
RA Leonard S., Crouse K., Collura K., Kudrna D., Currie J., He R.,
RA Angelova A., Rajasekar S., Mueller T., Lomeli R., Scara G., Ko A.,
RA Delaney K., Wissotski M., Lopez G., Campos D., Braidotti M., Ashley E.,
RA Golser W., Kim H., Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A.,
RA Fan C., Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T.,
RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L.,
RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P.,
RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A.,
RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C.,
RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., Jeddeloh J.A.,
RA Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., Nagel D.H., McCann M.C.,
RA SanMiguel P., Myers A.M., Nettleton D., Nguyen J., Penning B.W.,
RA Ponnala L., Schneider K.L., Schwartz D.C., Sharma A., Soderlund C.,
RA Springer N.M., Sun Q., Wang H., Waterman M., Westerman R., Wolfgruber T.K.,
RA Yang L., Yu Y., Zhang L., Zhou S., Zhu Q., Bennetzen J.L., Dawe R.K.,
RA Jiang J., Jiang N., Presting G.G., Wessler S.R., Aluru S.,
RA Martienssen R.A., Clifton S.W., McCombie W.R., Wing R.A., Wilson R.K.;
RT "The B73 maize genome: complexity, diversity, and dynamics.";
RL Science 326:1112-1115(2009).
RN [3] {ECO:0000313|EMBL:AQK39851.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Seedling {ECO:0000313|EMBL:AQK39851.1};
RG Maize Genome Sequencing Project;
RA Ware D.;
RT "Update maize B73 reference genome by single molecule sequencing
RT technologies.";
RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EnsemblPlants:Zm00001eb409200_P001}
RP IDENTIFICATION.
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb409200_P001};
RG EnsemblPlants;
RL Submitted (MAY-2021) to UniProtKB.
CC -!- SIMILARITY: Belongs to the REXO1/REXO3 family.
CC {ECO:0000256|ARBA:ARBA00006357}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; BT085325; ACR35678.1; -; mRNA.
DR EMBL; CM000786; AQK39851.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK39854.1; -; Genomic_DNA.
DR RefSeq; XP_008662193.1; XM_008663971.1.
DR AlphaFoldDB; C4J3C8; -.
DR SMR; C4J3C8; -.
DR IntAct; C4J3C8; 1.
DR STRING; 4577.C4J3C8; -.
DR PaxDb; 4577-GRMZM2G310674_P02; -.
DR EnsemblPlants; Zm00001eb409200_T001; Zm00001eb409200_P001; Zm00001eb409200.
DR Gramene; Zm00001eb409200_T001; Zm00001eb409200_P001; Zm00001eb409200.
DR eggNOG; KOG2248; Eukaryota.
DR HOGENOM; CLU_008679_3_0_1; -.
DR InParanoid; C4J3C8; -.
DR OMA; THFRNRA; -.
DR OrthoDB; 5479236at2759; -.
DR Proteomes; UP000007305; Chromosome 10.
DR ExpressionAtlas; C4J3C8; baseline and differential.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0004527; F:exonuclease activity; IBA:GO_Central.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR CDD; cd06145; REX1_like; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR013520; Exonuclease_RNaseT/DNA_pol3.
DR InterPro; IPR034922; REX1-like_exo.
DR InterPro; IPR047021; REXO1/3/4-like.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR PANTHER; PTHR12801:SF115; RNA EXONUCLEASE 5; 1.
DR PANTHER; PTHR12801; RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED; 1.
DR Pfam; PF00929; RNase_T; 1.
DR SMART; SM00479; EXOIII; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 1: Evidence at protein level;
KW Proteomics identification {ECO:0007829|PeptideAtlas:C4J3C8};
KW Reference proteome {ECO:0000313|Proteomes:UP000007305}.
FT DOMAIN 197..356
FT /note="Exonuclease"
FT /evidence="ECO:0000259|SMART:SM00479"
SQ SEQUENCE 552 AA; 60755 MW; 1FBBAC1D3A1582DE CRC64;
MSTASGNGNG GSSSSMLYDL YGPNAKPDVV FKEAALNSTL NLQDVQGLVT WVIGDGMLPS
WVFVKNKPLI PKVVLLYVPG LDATLYMSHT RLLSSLKELC GNPKPVLASS RMPDERHTID
ALLTCRVKRK RDVKTSNESS KPDIDGKLSS LDDLGDIPFP VTYYTLSEKD LEDNGYSFNL
PGFVPTVSAP SGSSPHKVLA LDCEMCVTKA GFELTRVTLI DIKGLVVLDR LVKPANSIID
YNTRFSGITA EMLADVSTTL QEIQEEFVGL VYKETILVGH SLENDLMALQ ISHGLIIDTA
VLYKYKRGSR CKIALRVLTR KFLGREIQNT GSGHDSVEDA KAALELAILK IKHGPDFGFQ
PSLSRQKLTS ILHESGKKCS LVDDVSVLER YSDTSCNSIA VFCDDDALSR SMKEVKNNKV
TFIWTQFSGL ISYFHRRAQD PEKLKSCVAE AIALKTCDGK TASKEARSKI CPELKEILCG
LDKKIKKLYG ALPENAMLIV CTGHGDTPLV QRLRKMLHHE EETIDSRETI VQALGDLQAQ
AEVALCFCCV KR
//
