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Database: UniProt
Entry: C4K8Z3_HAMD5
LinkDB: C4K8Z3_HAMD5
Original site: C4K8Z3_HAMD5 
ID   C4K8Z3_HAMD5            Unreviewed;       174 AA.
AC   C4K8Z3;
DT   07-JUL-2009, integrated into UniProtKB/TrEMBL.
DT   07-JUL-2009, sequence version 1.
DT   24-JAN-2024, entry version 76.
DE   RecName: Full=Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014};
GN   Name=rimM {ECO:0000256|HAMAP-Rule:MF_00014,
GN   ECO:0000313|EMBL:ACQ68862.1};
GN   OrderedLocusNames=HDEF_2325 {ECO:0000313|EMBL:ACQ68862.1};
OS   Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT).
OC   Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
OC   Enterobacteriaceae; aphid secondary symbionts; Candidatus Hamiltonella.
OX   NCBI_TaxID=572265 {ECO:0000313|EMBL:ACQ68862.1, ECO:0000313|Proteomes:UP000002334};
RN   [1] {ECO:0000313|EMBL:ACQ68862.1, ECO:0000313|Proteomes:UP000002334}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=5AT {ECO:0000313|Proteomes:UP000002334};
RX   PubMed=19451630; DOI=10.1073/pnas.0900194106;
RA   Degnan P.H., Yu Y., Sisneros N., Wing R.A., Moran N.A.;
RT   "Hamiltonella defensa, genome evolution of protective bacterial
RT   endosymbiont from pathogenic ancestors.";
RL   Proc. Natl. Acad. Sci. U.S.A. 106:9063-9068(2009).
CC   -!- FUNCTION: An accessory protein needed during the final step in the
CC       assembly of 30S ribosomal subunit, possibly for assembly of the head
CC       region. Essential for efficient processing of 16S rRNA. May be needed
CC       both before and after RbfA during the maturation of 16S rRNA. It has
CC       affinity for free ribosomal 30S subunits but not for 70S ribosomes.
CC       {ECO:0000256|HAMAP-Rule:MF_00014}.
CC   -!- SUBUNIT: Binds ribosomal protein uS19. {ECO:0000256|HAMAP-
CC       Rule:MF_00014}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00014}.
CC   -!- DOMAIN: The PRC barrel domain binds ribosomal protein uS19.
CC       {ECO:0000256|HAMAP-Rule:MF_00014}.
CC   -!- SIMILARITY: Belongs to the RimM family. {ECO:0000256|HAMAP-
CC       Rule:MF_00014}.
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DR   EMBL; CP001277; ACQ68862.1; -; Genomic_DNA.
DR   RefSeq; WP_015874581.1; NC_012751.1.
DR   AlphaFoldDB; C4K8Z3; -.
DR   STRING; 572265.HDEF_2325; -.
DR   GeneID; 66261814; -.
DR   KEGG; hde:HDEF_2325; -.
DR   eggNOG; COG0806; Bacteria.
DR   HOGENOM; CLU_077636_1_0_6; -.
DR   OMA; DEFYHAD; -.
DR   Proteomes; UP000002334; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0005840; C:ribosome; IEA:InterPro.
DR   GO; GO:0043022; F:ribosome binding; IEA:InterPro.
DR   GO; GO:0042274; P:ribosomal small subunit biogenesis; IEA:UniProtKB-UniRule.
DR   GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-UniRule.
DR   Gene3D; 2.30.30.240; PRC-barrel domain; 1.
DR   Gene3D; 2.40.30.60; RimM; 1.
DR   HAMAP; MF_00014; Ribosome_mat_RimM; 1.
DR   InterPro; IPR027275; PRC-brl_dom.
DR   InterPro; IPR011033; PRC_barrel-like_sf.
DR   InterPro; IPR011961; RimM.
DR   InterPro; IPR002676; RimM_N.
DR   InterPro; IPR036976; RimM_N_sf.
DR   InterPro; IPR009000; Transl_B-barrel_sf.
DR   NCBIfam; TIGR02273; 16S_RimM; 1.
DR   PANTHER; PTHR33692; RIBOSOME MATURATION FACTOR RIMM; 1.
DR   PANTHER; PTHR33692:SF1; RIBOSOME MATURATION FACTOR RIMM; 1.
DR   Pfam; PF05239; PRC; 1.
DR   Pfam; PF01782; RimM; 1.
DR   SUPFAM; SSF50346; PRC-barrel domain; 1.
DR   SUPFAM; SSF50447; Translation proteins; 1.
PE   3: Inferred from homology;
KW   Chaperone {ECO:0000256|ARBA:ARBA00023186, ECO:0000256|HAMAP-Rule:MF_00014};
KW   Cytoplasm {ECO:0000256|ARBA:ARBA00022490, ECO:0000256|HAMAP-Rule:MF_00014};
KW   Ribosome biogenesis {ECO:0000256|ARBA:ARBA00022517, ECO:0000256|HAMAP-
KW   Rule:MF_00014};
KW   rRNA processing {ECO:0000256|ARBA:ARBA00022552, ECO:0000256|HAMAP-
KW   Rule:MF_00014}.
FT   DOMAIN          11..92
FT                   /note="RimM N-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF01782"
FT   DOMAIN          99..163
FT                   /note="PRC-barrel"
FT                   /evidence="ECO:0000259|Pfam:PF05239"
SQ   SEQUENCE   174 AA;  20277 MW;  F761A17CC08F7155 CRC64;
     MTTHLKQPVI VGKIGSTYSV RGWLKMFSFT EKTDSIFDYQ PWFIQHKNHW QFIDIEDWKC
     HQQDFLLKIK NIDEKEKAQH FVNAEITVDA SQLPVLEEGD YYWKDIIGCQ VIHISGDVIG
     TVVSMIETGA NDVMVVQTQI QDHKSCLVPF LCDQVVKKVD KVMQQIQVDW DLDF
//
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