ID C4QXJ3_KOMPG Unreviewed; 920 AA.
AC C4QXJ3;
DT 07-JUL-2009, integrated into UniProtKB/TrEMBL.
DT 07-JUL-2009, sequence version 1.
DT 27-MAR-2024, entry version 67.
DE RecName: Full=RNA polymerase II assembly factor Rtp1 C-terminal domain-containing protein {ECO:0008006|Google:ProtNLM};
GN OrderedLocusNames=PAS_chr1-4_0138 {ECO:0000313|EMBL:CAY67966.1};
OS Komagataella phaffii (strain GS115 / ATCC 20864) (Yeast) (Pichia pastoris).
OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes;
OC Saccharomycetales; Phaffomycetaceae; Komagataella.
OX NCBI_TaxID=644223 {ECO:0000313|EMBL:CAY67966.1, ECO:0000313|Proteomes:UP000000314};
RN [1] {ECO:0000313|EMBL:CAY67966.1, ECO:0000313|Proteomes:UP000000314}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=GS115 / ATCC 20864 {ECO:0000313|Proteomes:UP000000314};
RX PubMed=19465926; DOI=10.1038/nbt.1544;
RA De Schutter K., Lin Y.C., Tiels P., Van Hecke A., Glinka S.,
RA Weber-Lehmann J., Rouze P., Van de Peer Y., Callewaert N.;
RT "Genome sequence of the recombinant protein production host Pichia
RT pastoris.";
RL Nat. Biotechnol. 27:561-566(2009).
CC -!- SIMILARITY: Belongs to the Tango6 family.
CC {ECO:0000256|ARBA:ARBA00005724}.
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DR EMBL; FN392319; CAY67966.1; -; Genomic_DNA.
DR RefSeq; XP_002490247.1; XM_002490202.1.
DR AlphaFoldDB; C4QXJ3; -.
DR EnsemblFungi; CAY67966; CAY67966; PAS_chr1-4_0138.
DR GeneID; 8197122; -.
DR KEGG; ppa:PAS_chr1-4_0138; -.
DR eggNOG; KOG4653; Eukaryota.
DR HOGENOM; CLU_006300_1_0_1; -.
DR InParanoid; C4QXJ3; -.
DR OMA; QVATLIC; -.
DR OrthoDB; 1424255at2759; -.
DR Proteomes; UP000000314; Chromosome 1.
DR Gene3D; 1.25.10.10; Leucine-rich Repeat Variant; 1.
DR InterPro; IPR011989; ARM-like.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR019451; Rtp1_C1.
DR InterPro; IPR019414; Rtp1_C2.
DR InterPro; IPR039600; TANGO6/Rtp1.
DR PANTHER; PTHR20959; TRANSPORT AND GOLGI ORGANIZATION PROTEIN 6 FAMILY MEMBER; 1.
DR PANTHER; PTHR20959:SF1; TRANSPORT AND GOLGI ORGANIZATION PROTEIN 6 HOMOLOG; 1.
DR Pfam; PF10363; RTP1_C1; 1.
DR Pfam; PF10304; RTP1_C2; 1.
DR SUPFAM; SSF48371; ARM repeat; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000000314}.
FT DOMAIN 660..766
FT /note="RNA polymerase II assembly factor Rtp1 C-terminal"
FT /evidence="ECO:0000259|Pfam:PF10363"
FT DOMAIN 873..897
FT /note="RNA polymerase II assembly factor Rtp1 C-terminal"
FT /evidence="ECO:0000259|Pfam:PF10304"
SQ SEQUENCE 920 AA; 104022 MW; DC577A4479D89BAB CRC64;
MSEKKPQVEY KQHKGLHKPE FLGNKPLDLL FKEISELFID GDGFDAVQSI LKKSHKLEEL
PPKESRYQVV QYLLSLLVQL HTLSNLERHQ NASVKKHNLI TISMHDMKTF NMLVNFIVIQ
GIYSCLPPGV GIPLPKRFLK SSQKIKVVKL GLPNGEKLLN MVIGEMLKIL EADGDVKDFL
MTGTGYSDVL CAIMCLLSYP ATSSNLTYQT LFDRVEQLCP TFELIKFYSS LVSSQQPHFK
LFVLTRLSNI PLFRNDGVMC LIEYICGLRD EEDIDIEKIE QVTSILLSKP TNISSTEYFK
VLGSQLYEIL ILIDRPVLTS VAGHILEHIY LKNSLIIKDF VFQKIWDNLD PKSTDNEELI
SEKDLNNTIN VIISIAQKAE PMFLIALFSP ILIPLWNYLC FLQQKGKSTK VMMGVLVSFF
TIVNSVELLN EIAQNLITNM ENWEFKLGPN DLPMIIRTPK SLDSTKTSRL FDTLDASLKL
YMSLLKDLDK GLVNKVFLDV LQRWLNGNHT LIADENPFKI LINLRLLEAI ASKFKDQLAE
EPEELLVITK SFLKNVGPAT TSYANIIKPE EDVDSDDEDE DEKTDKETLK MVLELLSSVI
SETSVANFSE GSIKELKEIQ TILPNLKLAA TQALLERINL IINGEPPKPK SQKEQDKQLF
ERAISSLNDP LVPIRAHGLY MLRQLIERKS EVISVDFVVQ LHLIQLKDED PFVYLNVIKG
LEALIELNKE QVAPLLVSLY VDDSQNLDER LRIGEVLLKH ITTANETIGE LGKLIVSNVL
SVIKRTDENT KDIRLRMSAM SILGMCCKVA PYCIIDYITD ALDCVLGVLQ LETSKEQNVM
RRAAVFLVCD LITGPAGLSG VPKGYGSKVL ISLRYIRDTD NDLLTREHAE KVLEIISESI
RESMVIKGGD MEQVRTIKGI
//
