ID C5WN11_SORBI Unreviewed; 998 AA.
AC C5WN11;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 27-MAR-2024, entry version 77.
DE RecName: Full=CNH domain-containing protein {ECO:0000259|PROSITE:PS50219};
GN ORFNames=SORBI_3001G114000 {ECO:0000313|EMBL:EER90990.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER90990.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EER90990.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000760; EER90990.1; -; Genomic_DNA.
DR RefSeq; XP_002463992.1; XM_002463947.1.
DR AlphaFoldDB; C5WN11; -.
DR STRING; 4558.C5WN11; -.
DR EnsemblPlants; EER90990; EER90990; SORBI_3001G114000.
DR GeneID; 8062271; -.
DR Gramene; EER90990; EER90990; SORBI_3001G114000.
DR KEGG; sbi:8062271; -.
DR eggNOG; KOG2063; Eukaryota.
DR HOGENOM; CLU_004190_0_0_1; -.
DR InParanoid; C5WN11; -.
DR OMA; LFRLPNF; -.
DR OrthoDB; 38195at2759; -.
DR Proteomes; UP000000768; Chromosome 1.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IEA:UniProt.
DR GO; GO:0016020; C:membrane; IBA:GO_Central.
DR GO; GO:0006914; P:autophagy; IBA:GO_Central.
DR GO; GO:0034058; P:endosomal vesicle fusion; IBA:GO_Central.
DR GO; GO:0006886; P:intracellular protein transport; IEA:UniProtKB-UniRule.
DR InterPro; IPR000547; Clathrin_H-chain/VPS_repeat.
DR InterPro; IPR001180; CNH_dom.
DR InterPro; IPR032914; Vam6/VPS39/TRAP1.
DR InterPro; IPR019452; VPS39/TGF_beta_rcpt-assoc_1.
DR InterPro; IPR019453; VPS39/TGF_beta_rcpt-assoc_2.
DR PANTHER; PTHR12894; CNH DOMAIN CONTAINING; 1.
DR PANTHER; PTHR12894:SF50; VACUOLAR SORTING PROTEIN 39; 1.
DR Pfam; PF00637; Clathrin; 1.
DR Pfam; PF00780; CNH; 1.
DR Pfam; PF10366; Vps39_1; 1.
DR Pfam; PF10367; Vps39_2; 1.
DR SUPFAM; SSF101908; Putative isomerase YbhE; 1.
DR PROSITE; PS50236; CHCR; 1.
DR PROSITE; PS50219; CNH; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000768}.
FT DOMAIN 16..292
FT /note="CNH"
FT /evidence="ECO:0000259|PROSITE:PS50219"
FT REGION 839..861
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 998 AA; 112199 MW; BCF2279983561A80 CRC64;
MVHSAYDAVE LVADVPGQIE AVASHAGKLL VAVSDTEGFL WGSDCSLRIY SAPPPSDGGG
EIRWDGTYAL ERQEPRFWRR PPLAMEVSAS RDLLISLSEW VALHRLPGLE TVAVVSSKTK
GANVFAWDER RGFLAVGRQK RLTIFRLDSG REFVEVKEFG VPDILKSMAW CGDNICLGIR
REYMIINSMT GALTEVFSSG RIAPPLVVPL PTGELILGKD NIGVFVDQNG KLIQDGRIIW
SDTPASVVIH RPFAVARLSR HVEIRSLRAP NALVQTVVLR DVQKLVQTDN CILAALSNSV
HGLLPVPIGA QIVQLTASGE FEEALALCKL LPPEDSNLRA AKESSIHIRY GHFLFDSGSY
EEAMEQFSDS HVDITYVLSL YPSIVLPQTN IIGEHDKLLD MPELTRESSD VTDEMESYSL
QLHDPDDKSP LEAKKMSHNA LAALVKYLQK KRSGIIERAT AEVTEEVVSG AVHHSLKLSE
PYKAKKLSKK RAQTHTSSIA REMATVLDTS LLQALILTGQ SSVAIELLKG LNYCDLKICE
EFLKERSEYM VLLELYKSNE MHREALRLLN QLVEESKSEM ENADFNKKFN PQMILEYLRP
LCRSDPMLVL ESSLYVLERN PSETIQLFLS ENVPADLVNS YLKQHAPNLQ STYLELMLSM
NDTGINPNLQ NELVQLYLSE VLDWYKILKE EGNWTEKTYS PTRKKLISTL ESNSGYNTDL
LLKRLPQDAL FEERAILYGK INQHLRALSL YVHKLQMPER AVAYCDRVYE EREQQPSKSN
IYFNLLQIYL NPRKAEKEFE QKIVPVASQY SGIQKASATK IKGGRIGKKV VEIEGADDIR
FSPSGTDSGR SDGDGDDVSD VNDGGPIMLN EALELLSQRW DRINGAQALR LLPRDTKLQD
LVSFLEPLLR NSSEHRRNYL VIKNLIFRAN LQVKEDLYKR CQAVVKIDGD SMCSLCHKRV
ANSAFAIYPN GQTLVHFVCF KESQQIKAVR GANSLKRR
//
