ID C5WSS0_SORBI Unreviewed; 691 AA.
AC C5WSS0;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 27-MAR-2024, entry version 74.
DE RecName: Full=Smr domain-containing protein {ECO:0000259|PROSITE:PS50828};
GN ORFNames=SORBI_3001G455500 {ECO:0000313|EMBL:EER92639.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER92639.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EER92639.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC {ECO:0000256|ARBA:ARBA00007626}.
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DR EMBL; CM000760; EER92639.1; -; Genomic_DNA.
DR RefSeq; XP_002465641.1; XM_002465596.1.
DR AlphaFoldDB; C5WSS0; -.
DR STRING; 4558.C5WSS0; -.
DR EnsemblPlants; EER92639; EER92639; SORBI_3001G455500.
DR GeneID; 8056885; -.
DR Gramene; EER92639; EER92639; SORBI_3001G455500.
DR KEGG; sbi:8056885; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_018319_0_0_1; -.
DR InParanoid; C5WSS0; -.
DR OMA; GVKPNMV; -.
DR OrthoDB; 904281at2759; -.
DR Proteomes; UP000000768; Chromosome 1.
DR GO; GO:0009570; C:chloroplast stroma; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0042134; F:rRNA primary transcript binding; IBA:GO_Central.
DR GO; GO:0009658; P:chloroplast organization; IEA:EnsemblPlants.
DR GO; GO:0031425; P:chloroplast RNA processing; IEA:EnsemblPlants.
DR GO; GO:0045727; P:positive regulation of translation; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR033443; PPR_long.
DR InterPro; IPR002625; Smr_dom.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 7.
DR PANTHER; PTHR47447; OS03G0856100 PROTEIN; 1.
DR PANTHER; PTHR47447:SF12; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN ATP4 HOMOLOG, CHLOROPLASTIC; 1.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 2.
DR Pfam; PF17177; PPR_long; 1.
DR SMART; SM00463; SMR; 1.
DR PROSITE; PS51375; PPR; 8.
DR PROSITE; PS50828; SMR; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT REPEAT 162..196
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 197..231
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 232..266
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 267..301
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 302..336
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 337..371
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 372..402
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 410..444
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 592..677
FT /note="Smr"
FT /evidence="ECO:0000259|PROSITE:PS50828"
FT REGION 1..74
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 29..45
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 59..74
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 691 AA; 75382 MW; 7E8CDB9905DBA36D CRC64;
MASLPLCRSP SSLVPSWPHR PIPASFNPKN PSSPVAAHVS VQDTPPQPQD PAPPSDSSPN
GTKPSSNTTR FLWVNPNSPR AADVARARAG SGRRARLSSA AAALGACEPA EAAVEAALEA
AFPEPPSEQD AVIVLNTAAA ARPETALLAL RWFLGNAKVR KKVILYNVVL NLLRKKRHWS
ETEALWAEML RDGVQPDNAT FSTVISCARA CGLHSKAVEW FDKMPEFGCS PDMLTYSAVI
DAYGRAGNSE AALRLYDRAR AEKWQLDPVI CSTVIKVHSI SGNFDGALNV FEEMKATGVK
PNLVVYNTML DAMGRALRPW VVKTIHREMV DQQVQPSRAT YCCLLHAYTR ARYGEDAMAV
YRLMKDEAMD IDVMLYNMLL SMCADIGYVD EAEEIFRDMK ASMDACSKPD SWSYSSMVTL
YSSTANVLGA EGILNEMVEA GFKPNIFVLT SLIRCYGKVG RTDDVVKSFG MLQDLCIIPD
DRFCGCLLSV AANTPVEELG KVISCIETSN AQLGAVVKLL VDRSSSPESF REAASELLGC
SRGVVKMPYC NCLMDLCVNL NQMEKACALL DAAQQLSIYA NIQTRTQTQW SLHLRGLSVG
AALTTLHVWM NDLYTSLQTG NEGLPPLLGI HTGQGKNTYS DRGLAAMFEA HLKELDAPFH
EAPDKAGWFL TTSVAAKHWL ETKAASELVT V
//
