ID C5XQT5_SORBI Unreviewed; 780 AA.
AC C5XQT5;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 24-JAN-2024, entry version 72.
DE RecName: Full=PB1 domain-containing protein {ECO:0000259|PROSITE:PS51745};
GN ORFNames=SORBI_3003G083400 {ECO:0000313|EMBL:EES00364.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES00364.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EES00364.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000762; EES00364.1; -; Genomic_DNA.
DR RefSeq; XP_002455244.1; XM_002455199.1.
DR AlphaFoldDB; C5XQT5; -.
DR STRING; 4558.C5XQT5; -.
DR EnsemblPlants; EES00364; EES00364; SORBI_3003G083400.
DR GeneID; 8061355; -.
DR Gramene; EES00364; EES00364; SORBI_3003G083400.
DR KEGG; sbi:8061355; -.
DR eggNOG; KOG4151; Eukaryota.
DR HOGENOM; CLU_014258_1_0_1; -.
DR InParanoid; C5XQT5; -.
DR OMA; CLPARPM; -.
DR OrthoDB; 5479011at2759; -.
DR Proteomes; UP000000768; Chromosome 3.
DR GO; GO:0003729; F:mRNA binding; IEA:EnsemblPlants.
DR CDD; cd05992; PB1; 1.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 1.
DR InterPro; IPR000270; PB1_dom.
DR InterPro; IPR044517; PHOX1-4.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR019734; TPR_repeat.
DR PANTHER; PTHR46183; PROTEIN CLMP1; 1.
DR PANTHER; PTHR46183:SF8; PROTEIN CLMP1; 1.
DR Pfam; PF00564; PB1; 1.
DR SMART; SM00666; PB1; 1.
DR SMART; SM00028; TPR; 3.
DR SUPFAM; SSF54277; CAD & PB1 domains; 1.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51745; PB1; 1.
DR PROSITE; PS50005; TPR; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW TPR repeat {ECO:0000256|PROSITE-ProRule:PRU00339}.
FT REPEAT 60..93
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT DOMAIN 300..394
FT /note="PB1"
FT /evidence="ECO:0000259|PROSITE:PS51745"
FT REGION 1..48
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 216..270
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 221..236
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 780 AA; 85600 MW; AE75D9661B4F633E CRC64;
MGKSGAKKKK PAAAAAAAAK PPPASAEQKA TPPPSSSLPA ANGGASPHQA VDAGVLLRRA
HELKEEGNRL FQSRDYAGAL RQYELALRLA PRGHPDRAVF HSNRAACLLQ LRPVDHEAVA
QECSLALQAE PRFPRALLRR ARALEALGRH ELALADALAL LALDPDHRDA IDLSYRLRSR
VNASSAASAS SAPEPTSRPS PAALGASAVV AGLGHSLPAR PFPKKQPPPP PPATLQPNLA
VMSKSNPSPL PKLVPFSNSP PSSAKPLAAD SSEKAMTLPV ASLLPATVEP LINKKVVTRW
RPLKLVYDHD IRLGQVPEKC SFRTLREFVA KRFPSSKAVL IKYKDADGDL VTITSTEELR
LAESFIDKVG HEVVENGREG DNKLPVLRLH LVEVSPEQEP TLPSEEEKLE EDEELLINGE
YSTLNTSAVV TNAEVMKQDV ENGVAEQSME TGKKDCGHAE CKEAEIDDWL LQFAELFRNQ
VGIDADAHLD LHELGMELCS EALEETVTSE EAQALFEMAA SKFQEVAALA LFNWGNVHMC
EARKRIPLDE SAPKEVMAAQ LRTAYHWVKE RYALAGHKYE EALKIKPDFY EGLLALGQQH
FETAKLHWSF ALADKADLST WDSLETFKLF DSAEHNMRAA TEMWEKVEEQ RMAELKEPGA
GEKDEVLRKR HAGGQPELTP EEAAEQAAVM RQQIHLFWGN MLFERSQVEF KLSVGDWKTN
LDASVERFKL AGASESDIST VLKNHFSNAA SECEEKKVMT SGTEISQTND NVEDKCVVET
//
