ID C5XV72_SORBI Unreviewed; 1221 AA.
AC C5XV72;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 27-MAR-2024, entry version 70.
DE RecName: Full=JmjC domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=SORBI_3004G338500 {ECO:0000313|EMBL:EES07724.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES07724.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EES07724.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; CM000763; EES07724.1; -; Genomic_DNA.
DR RefSeq; XP_002454748.1; XM_002454703.1.
DR AlphaFoldDB; C5XV72; -.
DR STRING; 4558.C5XV72; -.
DR EnsemblPlants; EES07724; EES07724; SORBI_3004G338500.
DR GeneID; 8056417; -.
DR Gramene; EES07724; EES07724; SORBI_3004G338500.
DR KEGG; sbi:8056417; -.
DR eggNOG; KOG1246; Eukaryota.
DR HOGENOM; CLU_000991_8_0_1; -.
DR InParanoid; C5XV72; -.
DR OMA; VWENSTF; -.
DR OrthoDB; 1205686at2759; -.
DR Proteomes; UP000000768; Chromosome 4.
DR GO; GO:0000785; C:chromatin; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0034647; F:histone H3K4me/H3K4me2/H3K4me3 demethylase activity; IBA:GO_Central.
DR GO; GO:0006338; P:chromatin remodeling; IBA:GO_Central.
DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR Gene3D; 3.30.160.360; -; 1.
DR Gene3D; 2.60.120.650; Cupin; 1.
DR InterPro; IPR003889; FYrich_C.
DR InterPro; IPR003888; FYrich_N.
DR InterPro; IPR003347; JmjC_dom.
DR InterPro; IPR003349; JmjN.
DR InterPro; IPR004198; Znf_C5HC2.
DR PANTHER; PTHR10694; LYSINE-SPECIFIC DEMETHYLASE; 1.
DR PANTHER; PTHR10694:SF98; LYSINE-SPECIFIC DEMETHYLASE JMJ16-RELATED; 1.
DR Pfam; PF05965; FYRC; 1.
DR Pfam; PF05964; FYRN; 1.
DR Pfam; PF02373; JmjC; 1.
DR Pfam; PF02375; JmjN; 1.
DR Pfam; PF02928; zf-C5HC2; 1.
DR SMART; SM00542; FYRC; 1.
DR SMART; SM00541; FYRN; 1.
DR SMART; SM00558; JmjC; 1.
DR SMART; SM00545; JmjN; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS51543; FYRC; 1.
DR PROSITE; PS51542; FYRN; 1.
DR PROSITE; PS51184; JMJC; 1.
DR PROSITE; PS51183; JMJN; 1.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 157..198
FT /note="JmjN"
FT /evidence="ECO:0000259|PROSITE:PS51183"
FT DOMAIN 352..518
FT /note="JmjC"
FT /evidence="ECO:0000259|PROSITE:PS51184"
FT REGION 64..87
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 221..241
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 693..713
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 726..748
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 65..84
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 225..239
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1221 AA; 136101 MW; 6D5C2105BE5C5E8C CRC64;
MMGTECIVAT LGGDPEPSIP PGFGPFVALA LQGIRDNVKS GDAHSSSAQA VQCKEKDVDI
VEHGSANSRS GTPASTSGTH SCRRSLRNRP PIDYSQFDLI WDDESDVESA EKGVGSVRHR
RQLPKGVLRG CAECADCQKV IARWNPSGAR RPVLEEAPVF YPSEEEFKDT LKYIESICPR
AEPYGICRIV PPPSWKPPCL LKEKNIWECS KFSTRVQKVD KLQNRKSSKK SRRGGMMKKR
RKLLELEDNN NLNHSQTGMQ QNQERFGFEP GPEFTLQTFK KYADDFNEQY FKKEVSGDSV
PSVEDIEGEY WRIVEKPTEE IEVVYGADLE TGTFGSGFPK FSPEVKSDVE HKYAESGWNL
NNLPRLQGSV LSFEGGDISG VLVPWVYVGM CFSSFCWHVE DHHLYSLNYM HWGAPKMWYG
VPGKDAVNLE AAMRKHLPDL FEEQPDLLHN LVTQFSPSLL KSEGVPVYRC VQHEGEFVLT
FPRAYHAGFN CGFNCAEAVN VAPIDWLPIG QDAVELYRKQ ARKITVSHDK LLLGAAREAI
RAQWDILFLK RNTADNLRWK SMCGLDSTIC KSLKARINLE LVQRQNICSP SQSRKMDAEF
DSTERECALC YYDLHLSASG CPCCPEKYTC LAHAKQLCSC DWDKRFFLFR YDVNELNLLA
DALGGKLSAI HRWGVSHLGL SLSSCVKREK DQDSKTLHRV TEGPRRSYMS QASTVSLAPS
VVCKEQNNNG NKMLNTSSLE TDTSGPFSEP IKSGNVSLQK ETQMRNEVLC TLNNSVSPEG
HKGSLNFPVP SGQSFSSNFA TRSLSTSGES MKTAYGLAVF EGSRESSRSG NCISSVGVHH
NIPPIMVDQG NNMNPSMESS NNSHRLMASN TNATQCHSYK DQMHVTPETR ACASSSQPFV
RTVLRAQSVS KEASAGVFGS KPLINSSLVK NTYGGSSSCG AHLGLPNFGN QQPSDGCLQR
KSESLCGSEA RGQPVLVVQP ALENRNRNGG AHKGPQIANV MHRFKSLVEP LEIGVVLSGR
LWSSSQAIFP KGFRSRVKYF SIVDPTQMAY YISEILDAGP QGPLFMVTLE NCLGELFINV
SPTKCWSMVR ERLNMEIRRR LSMGRTNLPA LQPPGSVDGF EMFGLLSPAI VQAIEARDRD
HICTEYWRSR SHIVTEDRDS RQMGPLQAQG PLHALRELFQ RANRNELLAL RSLLVSNNNL
DDFSRQQAAQ ILDEEMAKQW R
//
