ID C5YHG2_SORBI Unreviewed; 500 AA.
AC C5YHG2;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 24-JAN-2024, entry version 79.
DE RecName: Full=RNA polymerase sigma-70 domain-containing protein {ECO:0000259|PROSITE:PS00715};
GN ORFNames=SORBI_3007G053800 {ECO:0000313|EMBL:EES13412.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES13412.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EES13412.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
CC -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC {ECO:0000256|ARBA:ARBA00007788}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CM000766; EES13412.1; -; Genomic_DNA.
DR RefSeq; XP_002443917.1; XM_002443872.1.
DR AlphaFoldDB; C5YHG2; -.
DR STRING; 4558.C5YHG2; -.
DR EnsemblPlants; EES13412; EES13412; SORBI_3007G053800.
DR GeneID; 8080867; -.
DR Gramene; EES13412; EES13412; SORBI_3007G053800.
DR KEGG; sbi:8080867; -.
DR eggNOG; ENOG502QQ9I; Eukaryota.
DR HOGENOM; CLU_014793_3_4_1; -.
DR InParanoid; C5YHG2; -.
DR OMA; YGLENEC; -.
DR OrthoDB; 33789at2759; -.
DR Proteomes; UP000000768; Chromosome 7.
DR ExpressionAtlas; C5YHG2; baseline and differential.
DR GO; GO:0009507; C:chloroplast; IEA:EnsemblPlants.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0071482; P:cellular response to light stimulus; IEA:EnsemblPlants.
DR GO; GO:0071461; P:cellular response to redox state; IEA:EnsemblPlants.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:EnsemblPlants.
DR GO; GO:0080005; P:photosystem stoichiometry adjustment; IEA:EnsemblPlants.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007624; RNA_pol_sigma70_r3.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR PANTHER; PTHR30603:SF14; RNA POLYMERASE SIGMA FACTOR SIGA; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04539; Sigma70_r3; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
DR PROSITE; PS00715; SIGMA70_1; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 285..298
FT /note="RNA polymerase sigma-70"
FT /evidence="ECO:0000259|PROSITE:PS00715"
FT REGION 49..68
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 80..105
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 154..176
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 49..64
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 82..99
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 500 AA; 55962 MW; C6C0D97824D7DAFC CRC64;
MTATPAMIGL SAGKRLLATS FGNTDLAPPD AHPSLQFAPA APKLTVVAHR ASASSSSSSS
SPAGHARAHA IRALRNHSAP ALAPPLPLPL PPPPAADPAP ELDSEFEFEL ESSLEAIVLL
QRSMLEKQWQ LPFEDEDEDD ERLTKAAVVV ARSGVSARQR RMSGRRRGPG RKSVTVSPEL
MQSRNRIYLR GTVSKDLLTH KQVIQLSRKI KDGIWLQHQR SKLKEKLGNE PSYKQLAQSL
HISPPELRAR MRESFLAREM LTMSNIRLVI SIAQKYDNLG VELADLIQGG LIGLLRGIEK
FDASRGFRIS TYVYWWIRQG VSRALADNSK AFRLPTYLHE RLIAIRGAKY ALEDQGIAPT
VENIAESLNI SEKKVHNATE AVNKVLSLDQ QAFPSLNGLP GDTLHSYIED QNVANDPWHG
FEERYLKEEV NNLINSTLNE RERDIIRLYH GIGKQCHTWE DISRQFGLSR ERVRQVGLVA
MEKLKHAARR KHLDALLEEY
//
