ID C5YLK3_SORBI Unreviewed; 599 AA.
AC C5YLK3;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 27-MAR-2024, entry version 63.
DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES13909.1};
GN ORFNames=SORBI_3007G140400 {ECO:0000313|EMBL:EES13909.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES13909.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EES13909.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
CC -!- COFACTOR:
CC Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240;
CC Evidence={ECO:0000256|ARBA:ARBA00001968};
CC -!- SIMILARITY: Belongs to the CAF1 family.
CC {ECO:0000256|ARBA:ARBA00008372}.
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DR EMBL; CM000766; EES13909.1; -; Genomic_DNA.
DR RefSeq; XP_002444414.1; XM_002444369.1.
DR AlphaFoldDB; C5YLK3; -.
DR STRING; 4558.C5YLK3; -.
DR EnsemblPlants; EES13909; EES13909; SORBI_3007G140400.
DR GeneID; 8080603; -.
DR Gramene; EES13909; EES13909; SORBI_3007G140400.
DR KEGG; sbi:8080603; -.
DR eggNOG; KOG1990; Eukaryota.
DR HOGENOM; CLU_020384_1_0_1; -.
DR InParanoid; C5YLK3; -.
DR OMA; SRVKHWK; -.
DR OrthoDB; 276176at2759; -.
DR Proteomes; UP000000768; Chromosome 7.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0000175; F:3'-5'-RNA exonuclease activity; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:1905392; P:plant organ morphogenesis; IEA:EnsemblPlants.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 2.
DR InterPro; IPR006941; RNase_CAF1.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR PANTHER; PTHR15092; POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1; 1.
DR PANTHER; PTHR15092:SF42; POLY(A)-SPECIFIC RIBONUCLEASE PARN-LIKE; 1.
DR Pfam; PF04857; CAF1; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 3: Inferred from homology;
KW Exonuclease {ECO:0000256|ARBA:ARBA00022839};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722};
KW Reference proteome {ECO:0000313|Proteomes:UP000000768}.
SQ SEQUENCE 599 AA; 67307 MW; C6DB5EA81D0BFE54 CRC64;
MAAPRAAVAS AKQVTRQNFA EAVRELRAHL EACDYVAVAA QKTGAPTGWR RALPVDTAET
AYLKAKLAAE SFQPLQFAVC PFRLRSSSPS TLVAYPYNFH LFPRDELQLG MPSYSFSCQS
SYLSTMANDG FDFNMCIYDG ISYLSRVQES LARQKIFTSR PQQLLPSPST SVSDSVFVNR
IKSKILHWRK GYADPSKKDD GSLVSSLSRL ILGGETYGSR PSMSIDVCSD RQVQLVLEAV
NQISDDLVSL VVPHKAGAAR FVRVIFTNSK EDKNLLLMDI QKLEDEQNFK FRGFREVIDL
LSSSQKPIIS YNCLNDMTML HSKFIAPLPP NMHEFLCSLK MVFSNVVDIS HLWRQIGPLR
KAKNIQAALS YLQRQYCVPI EIEIPQQDGT SSVTKNEKNV LRITKLFAKL SNLLKISPEC
QLQSHEQCTA VEEYCNIFYP SCVVEGSDDA NFAIESDTTE IVSTDNIIFL WGFREKSVKE
LKPYLIGLHQ AFSEDFEVKL LDKTCSALIF RDSNTATQLL KEINSEGPSL NRFLSEGLKA
AGFEVYRKVC RLGLWDSDLA EVLEDVSTEL GVPTLPACST SRTYWNSALM LDLKEYLEY
//
