ID C5YLL8_SORBI Unreviewed; 363 AA.
AC C5YLL8;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 24-JAN-2024, entry version 60.
DE RecName: Full=Matrin-type domain-containing protein {ECO:0000259|PROSITE:PS50171};
GN ORFNames=SORBI_3007G141600 {ECO:0000313|EMBL:EES15063.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES15063.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EES15063.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|EMBL:EES15063.1}
RP NUCLEOTIDE SEQUENCE.
RA Paterson A., Mullet J., Bowers J., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A., Chapman J., Feltus F.,
RA Gowik U., Grigoriev I., Lyons E., Maher C., Martis M., Narechania A.,
RA Otillar R., Penning B., Salamov A., Wang Y., Zhang L., Carpita N.,
RA Freeling M., Gingle A., Hash C., Keller B., Klein P., Kresovich S.,
RA Mccann M., Ming R., Peterson D., Rahman M., Ware D., Westhoff P., Mayer K.,
RA Messing J., Sims D., Jenkins J., Shu S., Rokhsar D.;
RT "WGS assembly of Sorghum bicolor.";
RL Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000766; EES15063.1; -; Genomic_DNA.
DR EMBL; CM000766; OQU80539.1; -; Genomic_DNA.
DR RefSeq; XP_002445568.1; XM_002445523.1.
DR AlphaFoldDB; C5YLL8; -.
DR STRING; 4558.C5YLL8; -.
DR EnsemblPlants; EES15063; EES15063; SORBI_3007G141600.
DR EnsemblPlants; OQU80539; OQU80539; SORBI_3007G141600.
DR GeneID; 8077850; -.
DR Gramene; EES15063; EES15063; SORBI_3007G141600.
DR Gramene; OQU80539; OQU80539; SORBI_3007G141600.
DR KEGG; sbi:8077850; -.
DR eggNOG; KOG2186; Eukaryota.
DR HOGENOM; CLU_047480_0_0_1; -.
DR InParanoid; C5YLL8; -.
DR OMA; TWNCGIC; -.
DR OrthoDB; 355880at2759; -.
DR Proteomes; UP000000768; Chromosome 7.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 3.30.160.60; Classic Zinc Finger; 3.
DR InterPro; IPR000690; Matrin/U1-C_Znf_C2H2.
DR InterPro; IPR003604; Matrin/U1-like-C_Znf_C2H2.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR InterPro; IPR013087; Znf_C2H2_type.
DR PANTHER; PTHR47487; OS06G0651300 PROTEIN-RELATED; 1.
DR PANTHER; PTHR47487:SF4; OS08G0441900 PROTEIN; 1.
DR Pfam; PF12874; zf-met; 2.
DR SMART; SM00355; ZnF_C2H2; 3.
DR SMART; SM00451; ZnF_U1; 3.
DR SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 3.
DR PROSITE; PS50171; ZF_MATRIN; 1.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000000768}.
FT DOMAIN 189..219
FT /note="Matrin-type"
FT /evidence="ECO:0000259|PROSITE:PS50171"
FT REGION 281..302
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 363 AA; 40927 MW; 04BE721E0E390DDC CRC64;
MEIVRRAAAT ARLGDDDYRL PDPSPPHGQM SVDALRRELV KESIIQEIIA TELAEQRGLE
SEVPRELGLE HAGPVSLWTP AGLQLTTLPH HDTSPVRQRG LLHLGMPTLP ESCLEEGLLT
PGGMPVPRRS VKDRIDEWYR PPWHRISANE DALTEIEWAR LPKKTFSGVK RKRTDETSEA
NNKRLPEKWI CDLCHVNTSG EISFVEHCAG YRHQSNVADM EWAMETAEPT MIATAELYRS
MHHNPTAWNC SICQVKCSGE LDLNNHLNGR RHQENLGALW RESKEDEGES GSQEANLYEK
KEPQLVDMNQ RHSGWTCSIC QANCTSESDL ENHLRGRRHQ QNVNAQLVEA NSTTVAAHLG
GKK
//
