ID C5YYP8_SORBI Unreviewed; 444 AA.
AC C5YYP8;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 27-MAR-2024, entry version 79.
DE RecName: Full=RRM domain-containing protein {ECO:0000259|PROSITE:PS50102};
GN ORFNames=SORBI_3009G151800 {ECO:0000313|EMBL:EES19594.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES19594.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EES19594.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000768; EES19594.1; -; Genomic_DNA.
DR RefSeq; XP_002441164.1; XM_002441119.1.
DR AlphaFoldDB; C5YYP8; -.
DR STRING; 4558.C5YYP8; -.
DR EnsemblPlants; EES19594; EES19594; SORBI_3009G151800.
DR GeneID; 8077166; -.
DR Gramene; EES19594; EES19594; SORBI_3009G151800.
DR KEGG; sbi:8077166; -.
DR eggNOG; KOG1190; Eukaryota.
DR HOGENOM; CLU_015171_6_2_1; -.
DR InParanoid; C5YYP8; -.
DR OMA; NAHYARM; -.
DR OrthoDB; 4825346at2759; -.
DR Proteomes; UP000000768; Chromosome 9.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0043484; P:regulation of RNA splicing; IBA:GO_Central.
DR CDD; cd12687; RRM1_PTBPH3; 1.
DR CDD; cd12698; RRM3_PTBPH3; 1.
DR Gene3D; 3.30.70.330; -; 4.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR021790; PTBP1-like_RRM2.
DR InterPro; IPR034795; PTBPH3_RRM1.
DR InterPro; IPR034797; PTBPH3_RRM3.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR PANTHER; PTHR15592; MATRIN 3/NUCLEAR PROTEIN 220-RELATED; 1.
DR PANTHER; PTHR15592:SF18; SMOOTH, ISOFORM T; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF13893; RRM_5; 2.
DR Pfam; PF11835; RRM_8; 1.
DR SMART; SM00360; RRM; 4.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 3.
DR PROSITE; PS50102; RRM; 3.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00176}.
FT DOMAIN 6..80
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 257..331
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 367..441
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 191..211
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 191..206
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 444 AA; 49751 MW; 301450575B1CEE11 CRC64;
MSEPSKVIHI RNVGHEIAES DLLQLLQPFG VVSKIVMLRA KNQALLQMED IHASVSALQY
YTSVQPSIRG RNVYMQFSSH QELTTDQSSH GRNSDQESEP NRILLVTIHH MIYPITVEVL
HQVFKAYGFV EKIVTFQKSA GFQALIQFHS RQEAVEAFGS LHGRNIYDGC CQLDIQYSNL
SELQVHYNND RSRDFTNPSL PTEQRPRAPQ QGYPDPANLY AFQQAGASFA QMGRAAMIAA
AFGGSLPHGV TGANERCTLI VSNLNTDKID EDKLFNLFSL YGNIVRIKIL RNKPDHALVE
MADGLQAELA VHYLKGAILF GKKLEVNYSK YPNITPAPDA HDYLNSSLNR FNSNVVKNYR
HCCSPTKMIH ISALPQEISE EAILNHVSEH GNVLNTKLFE VNGKRQALVL FETEEEATEA
LVSKHASTLE GNTIRISFSQ MQSI
//
