ID C5Z6A7_SORBI Unreviewed; 445 AA.
AC C5Z6A7;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 27-MAR-2024, entry version 73.
DE RecName: Full=UBX domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=SORBI_3010G199800 {ECO:0000313|EMBL:EER90078.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER90078.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EER90078.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000769; EER90078.1; -; Genomic_DNA.
DR RefSeq; XP_002438711.1; XM_002438666.1.
DR AlphaFoldDB; C5Z6A7; -.
DR STRING; 4558.C5Z6A7; -.
DR EnsemblPlants; EER90078; EER90078; SORBI_3010G199800.
DR GeneID; 8067682; -.
DR Gramene; EER90078; EER90078; SORBI_3010G199800.
DR KEGG; sbi:8067682; -.
DR eggNOG; KOG2086; Eukaryota.
DR HOGENOM; CLU_029402_4_1_1; -.
DR InParanoid; C5Z6A7; -.
DR OMA; IQKKENC; -.
DR OrthoDB; 412879at2759; -.
DR Proteomes; UP000000768; Chromosome 10.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0043130; F:ubiquitin binding; IBA:GO_Central.
DR GO; GO:0000045; P:autophagosome assembly; IBA:GO_Central.
DR GO; GO:0007030; P:Golgi organization; IBA:GO_Central.
DR GO; GO:0061025; P:membrane fusion; IBA:GO_Central.
DR GO; GO:0031468; P:nuclear membrane reassembly; IBA:GO_Central.
DR GO; GO:0043161; P:proteasome-mediated ubiquitin-dependent protein catabolic process; IBA:GO_Central.
DR CDD; cd01770; UBX_UBXN2; 1.
DR Gene3D; 1.10.8.10; DNA helicase RuvA subunit, C-terminal domain; 1.
DR Gene3D; 3.30.420.210; SEP domain; 1.
DR InterPro; IPR036241; NSFL1C_SEP_dom_sf.
DR InterPro; IPR012989; SEP_domain.
DR InterPro; IPR009060; UBA-like_sf.
DR InterPro; IPR029071; Ubiquitin-like_domsf.
DR InterPro; IPR001012; UBX_dom.
DR PANTHER; PTHR23333:SF25; OS06G0634600 PROTEIN; 1.
DR PANTHER; PTHR23333; UBX DOMAIN CONTAINING PROTEIN; 1.
DR Pfam; PF08059; SEP; 1.
DR Pfam; PF14555; UBA_4; 1.
DR Pfam; PF00789; UBX; 1.
DR SMART; SM00553; SEP; 1.
DR SMART; SM00166; UBX; 1.
DR SUPFAM; SSF102848; NSFL1 (p97 ATPase) cofactor p47, SEP domain; 1.
DR SUPFAM; SSF46934; UBA-like; 1.
DR SUPFAM; SSF54236; Ubiquitin-like; 1.
DR PROSITE; PS51399; SEP; 1.
DR PROSITE; PS50033; UBX; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000768}.
FT DOMAIN 262..326
FT /note="SEP"
FT /evidence="ECO:0000259|PROSITE:PS51399"
FT DOMAIN 369..444
FT /note="UBX"
FT /evidence="ECO:0000259|PROSITE:PS50033"
FT REGION 52..259
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 340..363
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 78..116
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 117..139
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 201..232
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 344..363
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 445 AA; 47306 MW; 3F0D777538D764E0 CRC64;
MAAGDAGRAP TAAAAQSLVE SFCGVTSATP QEAAFYLESH NWALESAVRS YYDSADGEPD
AGAADPVPPP PAAPAGGGED TEDEDYVVGG GGDEDEDDED YVDGDDGDDE DAALAAEAAA
EEERRRPVKR QKKSHDARGG SGSRSGSRAR AGGASARGNV RTLSDLGGGK GTAGSDENSE
DDDEWAPPPE YFTGGETSGM VVRDRSKRKN NTDEVFKQAK RKGAKQGPFE ARRRSSSRNF
TGTGRLLTGE TVERDAPQPP EEIVHNIYFW RNGFTVNDGP LRSFDDPANA SFLKSIKDSV
CPTELEPADG KSKVNVNLVR KEEEFTEPVK HAAPFEGERR TLMEPSDNNT SNAAASSSVP
APRTITVDDS LPSTSLQIRF ADGSRLVARF NTSHTIGDVR SFIDATRPAS SDYTLQAGFP
PKPLEDATKT IEEAGIANSV IIQSV
//
