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Database: UniProt
Entry: C6PS99_9CLOT
LinkDB: C6PS99_9CLOT
Original site: C6PS99_9CLOT 
ID   C6PS99_9CLOT            Unreviewed;       722 AA.
AC   C6PS99;
DT   22-SEP-2009, integrated into UniProtKB/TrEMBL.
DT   22-SEP-2009, sequence version 1.
DT   24-JAN-2024, entry version 83.
DE   RecName: Full=Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895};
DE            Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};
DE            EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};
GN   Name=rnr {ECO:0000256|HAMAP-Rule:MF_01895};
GN   ORFNames=CcarbDRAFT_1666 {ECO:0000313|EMBL:EET87896.1};
OS   Clostridium carboxidivorans P7.
OC   Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae;
OC   Clostridium.
OX   NCBI_TaxID=536227 {ECO:0000313|EMBL:EET87896.1, ECO:0000313|Proteomes:UP000004198};
RN   [1] {ECO:0000313|EMBL:EET87896.1, ECO:0000313|Proteomes:UP000004198}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=P7 {ECO:0000313|EMBL:EET87896.1,
RC   ECO:0000313|Proteomes:UP000004198};
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D.,
RA   Goodwin L., Pitluck S., Larimer F., Land M.L., Hauser L., Hemme C.L.;
RT   "The draft genome of Clostridium carboxidivorans P7.";
RL   Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: 3'-5' exoribonuclease that releases 5'-nucleoside
CC       monophosphates and is involved in maturation of structured RNAs.
CC       {ECO:0000256|HAMAP-Rule:MF_01895}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=Exonucleolytic cleavage in the 3'- to 5'-direction to yield
CC         nucleoside 5'-phosphates.; EC=3.1.13.1;
CC         Evidence={ECO:0000256|ARBA:ARBA00001849, ECO:0000256|HAMAP-
CC         Rule:MF_01895};
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01895}.
CC   -!- SIMILARITY: Belongs to the RNR ribonuclease family. RNase R subfamily.
CC       {ECO:0000256|HAMAP-Rule:MF_01895}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:EET87896.1}.
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DR   EMBL; ACVI01000021; EET87896.1; -; Genomic_DNA.
DR   RefSeq; WP_007060551.1; NZ_CP011803.1.
DR   AlphaFoldDB; C6PS99; -.
DR   STRING; 536227.Ccar_22240; -.
DR   KEGG; cck:Ccar_22240; -.
DR   PATRIC; fig|536227.13.peg.4600; -.
DR   eggNOG; COG0557; Bacteria.
DR   OrthoDB; 9764149at2; -.
DR   Proteomes; UP000004198; Unassembled WGS sequence.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0008859; F:exoribonuclease II activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0016070; P:RNA metabolic process; IEA:UniProtKB-UniRule.
DR   CDD; cd04471; S1_RNase_R; 1.
DR   Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 3.
DR   HAMAP; MF_01895; RNase_R; 1.
DR   InterPro; IPR011129; CSD.
DR   InterPro; IPR040476; CSD2.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR013223; RNase_B_OB_dom.
DR   InterPro; IPR001900; RNase_II/R.
DR   InterPro; IPR004476; RNase_II/RNase_R.
DR   InterPro; IPR011805; RNase_R.
DR   InterPro; IPR003029; S1_domain.
DR   NCBIfam; TIGR00358; 3_prime_RNase; 1.
DR   NCBIfam; TIGR02063; RNase_R; 1.
DR   PANTHER; PTHR23355:SF9; DIS3-LIKE EXONUCLEASE 2; 1.
DR   PANTHER; PTHR23355; RIBONUCLEASE; 1.
DR   Pfam; PF17876; CSD2; 1.
DR   Pfam; PF08206; OB_RNB; 1.
DR   Pfam; PF00773; RNB; 1.
DR   Pfam; PF00575; S1; 1.
DR   SMART; SM00357; CSP; 2.
DR   SMART; SM00955; RNB; 1.
DR   SMART; SM00316; S1; 1.
DR   SUPFAM; SSF50249; Nucleic acid-binding proteins; 4.
DR   PROSITE; PS50126; S1; 1.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01895};
KW   Exonuclease {ECO:0000256|ARBA:ARBA00022839, ECO:0000256|HAMAP-
KW   Rule:MF_01895};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_01895};
KW   Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_01895};
KW   Reference proteome {ECO:0000313|Proteomes:UP000004198};
KW   RNA-binding {ECO:0000256|HAMAP-Rule:MF_01895}.
FT   DOMAIN          622..702
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
FT   COILED          587..614
FT                   /evidence="ECO:0000256|SAM:Coils"
SQ   SEQUENCE   722 AA;  83309 MW;  F697E5491B79B373 CRC64;
     MNIRETLISF MTEQAYKPMN MRELERVFSI KKSERKVFEK VLEEMESDGD VVKTRTEYYG
     IPDRMGLVVG KLQGHPKGFG FVITDDDRPD IFIPSSYMNG AMNGDKVVAK ITREENRGKK
     CEGEIIRILQ RSNKTVIGVY EDSRNFGFVV PEEKRIYQDV FIPKGSRNGA KTGDIVIADI
     TSWPDKRRNP EGTVVEILGK KGEKGIDILT IIKKNNLPEE FPVKVQGYAE GIPDEIPEEE
     YERRKDLRDL TIVTIDGEDA KDLDDAVSLE KLPNGNYHLG VHIADVSNYV KDKNPLDKEA
     LKRATSVYLI DRVIPMLPKK LSNGICSLNP KVDRLTLSCF MEIDKTGKVV DHNITESIIK
     TNERMTYTDV TKILRDTDED VIKRYDYLVD TFKLMEELCG ILYKKRIQRG AIDFDFEECK
     IILNELGKPI EIKPYERAIA NRIIEEFMLV CNETIAEHMF WANMPFVYRI HEEPDEEKLM
     HFNEFVHNLG YVVRMGQEVH PKALQDIVEK VKGKKEETVV STLLLRSMMK ARYAPECTGH
     FGLAARYYCH FTSPIRRYPD LIIHRIIKEF INGQIDDKRN KILTADVEYA SKQSSEMERV
     AQDAEREVED LKKAEYMSER IGQEFEGIIS SVTNFGMFVE LPNTIEGLVH ISSLDDDYYV
     YDEKHLSLIG ERTKNIYKLG DEAKIKVSKV DMFAHEIYFE LVKPEKDEEE LEVSNEIANN
     VD
//
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