ID C6Y1J8_PEDHD Unreviewed; 236 AA.
AC C6Y1J8;
DT 22-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 22-SEP-2009, sequence version 1.
DT 27-MAR-2024, entry version 61.
DE RecName: Full=Uracil-DNA glycosylase-like domain-containing protein {ECO:0000259|Pfam:PF03167};
GN OrderedLocusNames=Phep_0752 {ECO:0000313|EMBL:ACU02974.1};
OS Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457
OS / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3).
OC Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
OC Sphingobacteriaceae; Pedobacter.
OX NCBI_TaxID=485917 {ECO:0000313|EMBL:ACU02974.1, ECO:0000313|Proteomes:UP000000852};
RN [1] {ECO:0000313|EMBL:ACU02974.1, ECO:0000313|Proteomes:UP000000852}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 /
RC NCIMB 9290 / NRRL B-14731 / HIM 762-3
RC {ECO:0000313|Proteomes:UP000000852};
RX PubMed=21304637; DOI=10.4056/sigs.22138;
RA Han C., Spring S., Lapidus A., Del Rio T.G., Tice H., Copeland A.,
RA Cheng J.F., Lucas S., Chen F., Nolan M., Bruce D., Goodwin L., Pitluck S.,
RA Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A., Palaniappan K.,
RA Land M., Hauser L., Chang Y.J., Jeffries C.C., Saunders E., Chertkov O.,
RA Brettin T., Goker M., Rohde M., Bristow J., Eisen J.A., Markowitz V.,
RA Hugenholtz P., Kyrpides N.C., Klenk H.P., Detter J.C.;
RT "Complete genome sequence of Pedobacter heparinus type strain (HIM 762-
RT 3).";
RL Stand. Genomic Sci. 1:54-62(2009).
RN [2] {ECO:0007829|PDB:5H0J, ECO:0007829|PDB:5H0K}
RP X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS).
RX PubMed=28049757; DOI=10.1042/BCJ20160934;
RA Pang P., Yang Y., Li J., Wang Z., Cao W., Xie W.;
RT "SMUG2 DNA glycosylase from <i>Pedobacter heparinus</i> as a new subfamily
RT of the UDG superfamily.";
RL Biochem. J. 474:923-938(2017).
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DR EMBL; CP001681; ACU02974.1; -; Genomic_DNA.
DR RefSeq; WP_012780920.1; NZ_AQGK01000003.1.
DR PDB; 5H0J; X-ray; 1.80 A; A=1-236.
DR PDB; 5H0K; X-ray; 2.25 A; A=1-236.
DR PDBsum; 5H0J; -.
DR PDBsum; 5H0K; -.
DR AlphaFoldDB; C6Y1J8; -.
DR SMR; C6Y1J8; -.
DR STRING; 485917.Phep_0752; -.
DR KEGG; phe:Phep_0752; -.
DR eggNOG; ENOG502Z9QW; Bacteria.
DR HOGENOM; CLU_1199042_0_0_10; -.
DR OrthoDB; 7107805at2; -.
DR BRENDA; 3.2.2.15; 2286.
DR Proteomes; UP000000852; Chromosome.
DR CDD; cd19375; UDG-F3-like_SMUG2; 1.
DR Gene3D; 3.40.470.10; Uracil-DNA glycosylase-like domain; 1.
DR InterPro; IPR032579; Phe_SMUG2-like.
DR InterPro; IPR005122; Uracil-DNA_glycosylase-like.
DR InterPro; IPR036895; Uracil-DNA_glycosylase-like_sf.
DR Pfam; PF03167; UDG; 1.
DR SUPFAM; SSF52141; Uracil-DNA glycosylase-like; 1.
PE 1: Evidence at protein level;
KW 3D-structure {ECO:0007829|PDB:5H0J, ECO:0007829|PDB:5H0K};
KW Reference proteome {ECO:0000313|Proteomes:UP000000852}.
FT DOMAIN 48..228
FT /note="Uracil-DNA glycosylase-like"
FT /evidence="ECO:0000259|Pfam:PF03167"
SQ SEQUENCE 236 AA; 27104 MW; 68A01946F06FC293 CRC64;
MMTFADKVIQ FNKDLSYTGS TLPPGIRIMN PFKEHEQTMH IVEAFYHKYY NDNQSRYLIL
GINPGRFGSG LTGIPFTDPK RLITECNIPY SGKLSHEPSS VFIYEMINAF GGAEAFYKQF
YISSPCPLGF TSIAANGKEK NYNYYDSKAL EKAVYEFIIE NIRKQLTLGI TTDTCFCLGT
GKNEKFLMKV NAQYKFFKRI VALEHPRFIM QYKTASKQFY IDKYISAFKA LNNSAI
//
