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Database: UniProt
Entry: CLPC2_ORYSJ
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Original site: CLPC2_ORYSJ 
ID   CLPC2_ORYSJ             Reviewed;         919 AA.
AC   Q2QVG9; A0A0P0Y8B5;
DT   21-SEP-2011, integrated into UniProtKB/Swiss-Prot.
DT   11-JUL-2006, sequence version 2.
DT   24-JAN-2024, entry version 121.
DE   RecName: Full=Chaperone protein ClpC2, chloroplastic;
DE   AltName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC homolog 2;
DE   AltName: Full=Casein lytic proteinase C2;
DE   Flags: Precursor;
GN   Name=CLPC2; OrderedLocusNames=Os12g0230100, LOC_Os12g12850;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG   The rice chromosomes 11 and 12 sequencing consortia;
RT   "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT   genes and recent gene duplications.";
RL   BMC Biol. 3:20-20(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
CC   -!- FUNCTION: Molecular chaperone that may interact with a ClpP-like
CC       protease involved in degradation of denatured proteins in the
CC       chloroplast. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the ClpA/ClpB family. ClpC subfamily.
CC       {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AK066153; Type=Frameshift; Evidence={ECO:0000305};
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DR   EMBL; DP000011; ABA96309.2; -; Genomic_DNA.
DR   EMBL; DP000011; ABG21929.1; -; Genomic_DNA.
DR   EMBL; AP008218; BAF29461.1; -; Genomic_DNA.
DR   EMBL; AP014968; BAT16428.1; -; Genomic_DNA.
DR   EMBL; AK066153; -; NOT_ANNOTATED_CDS; mRNA.
DR   RefSeq; XP_015620084.1; XM_015764598.1.
DR   RefSeq; XP_015620085.1; XM_015764599.1.
DR   AlphaFoldDB; Q2QVG9; -.
DR   SMR; Q2QVG9; -.
DR   STRING; 39947.Q2QVG9; -.
DR   PaxDb; 39947-Q2QVG9; -.
DR   EnsemblPlants; Os12t0230100-01; Os12t0230100-01; Os12g0230100.
DR   GeneID; 4351828; -.
DR   Gramene; Os12t0230100-01; Os12t0230100-01; Os12g0230100.
DR   KEGG; osa:4351828; -.
DR   eggNOG; KOG1051; Eukaryota.
DR   HOGENOM; CLU_005070_4_1_1; -.
DR   InParanoid; Q2QVG9; -.
DR   OMA; EKYMEVY; -.
DR   OrthoDB; 275944at2759; -.
DR   Proteomes; UP000000763; Chromosome 12.
DR   Proteomes; UP000059680; Chromosome 12.
DR   Genevisible; Q2QVG9; OS.
DR   GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR   CDD; cd00009; AAA; 1.
DR   CDD; cd19499; RecA-like_ClpB_Hsp104-like; 1.
DR   Gene3D; 1.10.8.60; -; 2.
DR   Gene3D; 1.10.1780.10; Clp, N-terminal domain; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR   Gene3D; 4.10.860.10; UVR domain; 1.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR003959; ATPase_AAA_core.
DR   InterPro; IPR019489; Clp_ATPase_C.
DR   InterPro; IPR036628; Clp_N_dom_sf.
DR   InterPro; IPR004176; Clp_R_dom.
DR   InterPro; IPR001270; ClpA/B.
DR   InterPro; IPR018368; ClpA/B_CS1.
DR   InterPro; IPR028299; ClpA/B_CS2.
DR   InterPro; IPR041546; ClpA/ClpB_AAA_lid.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR001943; UVR_dom.
DR   PANTHER; PTHR11638:SF151; -; 1.
DR   PANTHER; PTHR11638; ATP-DEPENDENT CLP PROTEASE; 1.
DR   Pfam; PF00004; AAA; 1.
DR   Pfam; PF07724; AAA_2; 1.
DR   Pfam; PF17871; AAA_lid_9; 1.
DR   Pfam; PF02861; Clp_N; 2.
DR   Pfam; PF10431; ClpB_D2-small; 1.
DR   PRINTS; PR00300; CLPPROTEASEA.
DR   SMART; SM00382; AAA; 2.
DR   SMART; SM01086; ClpB_D2-small; 1.
DR   SUPFAM; SSF81923; Double Clp-N motif; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR   PROSITE; PS51903; CLP_R; 1.
DR   PROSITE; PS00870; CLPAB_1; 1.
DR   PROSITE; PS00871; CLPAB_2; 1.
DR   PROSITE; PS50151; UVR; 1.
PE   2: Evidence at transcript level;
KW   ATP-binding; Chaperone; Chloroplast; Nucleotide-binding; Plastid;
KW   Reference proteome; Repeat; Transit peptide.
FT   TRANSIT         1..54
FT                   /note="Chloroplast"
FT                   /evidence="ECO:0000255"
FT   CHAIN           55..919
FT                   /note="Chaperone protein ClpC2, chloroplastic"
FT                   /id="PRO_0000412580"
FT   DOMAIN          89..231
FT                   /note="Clp R"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01251"
FT   DOMAIN          506..541
FT                   /note="UVR"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00217"
FT   REGION          92..157
FT                   /note="Repeat 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01251"
FT   REGION          167..231
FT                   /note="Repeat 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01251"
FT   REGION          252..499
FT                   /note="I"
FT                   /evidence="ECO:0000250"
FT   REGION          566..757
FT                   /note="II"
FT                   /evidence="ECO:0000250"
FT   BINDING         297..304
FT                   /ligand="ATP"
FT                   /ligand_id="ChEBI:CHEBI:30616"
FT                   /evidence="ECO:0000255"
FT   BINDING         640..647
FT                   /ligand="ATP"
FT                   /ligand_id="ChEBI:CHEBI:30616"
FT                   /evidence="ECO:0000255"
SQ   SEQUENCE   919 AA;  102017 MW;  33F171C85CF0E6E2 CRC64;
     MAGTLLQPVA LGTTFAGRVS GQRWKSHGTR RPPSMLAMSL SRPVKMAAFV GLRSVHSFSV
     TPVTNFRSTV ASYRSRRGRR ARFVTRSMFE RFTEKAIKVI MLAQEEARRL GHNFVGTEQI
     LLGLIGEGTG IAAKVLKSMG INLKDARVEV EKIIGRGNGF VAVEIPFTPR AKRVLELSLE
     EARQLGHNYI GSEHLLLGLL REGEGVAARV LESLGADPSN IRTQVIRMIG ETTEAVGAGV
     GGGSSGNKMP TLEEYGTNLT KLAEEGKLDP VVGRQPQIER VVQILGRRTK NNPCLIGEPG
     VGKTAIAEGL AQRISTGDVP ETIEGKKVIT LDMGLLVAGT KYRGEFEERL KKLMEEIKQS
     DEIILFIDEV HTLIGAGAAE GAIDAANILK PALARGELQC IGATTLDEYR KHIEKDPALE
     RRFQPVRVPE PTVDETIEIL RGLRERYEIH HKLRYTDDAL ISAAKLSYQY ISDRFLPDKA
     IDLIDEAGSR VRLRHAQVPE EARELDKELK QITKDKNEAV RSQDFEKAGE LRDREMELKA
     QITALIDKSK EMSKAETESG ETGPLVNEAD IQHIVSSWTG IPVEKVSSDE SDKLLKMEET
     LHQRVIGQDE AVKAISRSIR RARVGLKNPN RPIASFIFAG PTGVGKSELA KALAAYYFGS
     EEAMIRLDMS EFMERHTVSK LIGSPPGYVG YTEGGQLTEA VRRRPYTVVL FDEIEKAHPD
     VFNMMLQILE DGRLTDSKGR TVDFKNTLLI MTSNVGSSVI EKGGRKIGFD LDYDEKDSSY
     SRIKSLVVEE MKQYFRPEFL NRLDEMIVFR QLTKLEVKEI AEIMLKEVFD RLKAKDIDLQ
     VTEKFKERIV DEGFNPSYGA RPLRRAIMRL LEDSLAEKML AGEVKEGDSA IVDVDSEGKV
     IVLNGQSGLP ELSTPAVTV
//
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