ID COPB1_ORYSJ Reviewed; 953 AA.
AC Q53PC7; A0A0P0XZH3; A3C942; B9G9M8; Q0IU95;
DT 01-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT 24-MAY-2005, sequence version 1.
DT 27-MAR-2024, entry version 124.
DE RecName: Full=Coatomer subunit beta-1;
DE AltName: Full=Beta-coat protein 1;
DE Short=Beta-COP 1;
GN OrderedLocusNames=Os11g0174000, LOC_Os11g07280;
GN ORFNames=OsJ_031814, OsJ_33144, OSJNBa0055G24, OSJNBb0063D09;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: The coatomer is a cytosolic protein complex that binds to
CC dilysine motifs and reversibly associates with Golgi non-clathrin-
CC coated vesicles, which further mediate biosynthetic protein transport
CC from the ER, via the Golgi up to the trans Golgi network. Coatomer
CC complex is required for budding from Golgi membranes, and is essential
CC for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
CC (By similarity). {ECO:0000250}.
CC -!- SUBUNIT: Oligomeric complex that consists of at least the alpha, beta,
CC beta', gamma, delta, epsilon and zeta subunits. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. Golgi apparatus membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}; Cytoplasmic
CC side {ECO:0000250}. Cytoplasmic vesicle, COPI-coated vesicle membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}; Cytoplasmic
CC side {ECO:0000250}. Note=The coatomer is cytoplasmic or polymerized on
CC the cytoplasmic side of the Golgi, as well as on the vesicles/buds
CC originating from it. {ECO:0000250}.
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DR EMBL; AC120539; AAX95778.1; -; Genomic_DNA.
DR EMBL; AC123897; AAX93023.1; -; Genomic_DNA.
DR EMBL; DP000010; ABA91740.1; -; Genomic_DNA.
DR EMBL; AP008217; BAF27720.2; -; Genomic_DNA.
DR EMBL; AP014967; BAT12894.1; -; Genomic_DNA.
DR EMBL; CM000148; EEE51734.1; -; Genomic_DNA.
DR EMBL; AK069716; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015616972.1; XM_015761486.1.
DR AlphaFoldDB; Q53PC7; -.
DR SMR; Q53PC7; -.
DR BioGRID; 818950; 1.
DR STRING; 39947.Q53PC7; -.
DR PaxDb; 39947-Q53PC7; -.
DR EnsemblPlants; Os11t0174000-01; Os11t0174000-01; Os11g0174000.
DR EnsemblPlants; Os11t0174000-03; Os11t0174000-03; Os11g0174000.
DR GeneID; 4349913; -.
DR Gramene; Os11t0174000-01; Os11t0174000-01; Os11g0174000.
DR Gramene; Os11t0174000-03; Os11t0174000-03; Os11g0174000.
DR KEGG; osa:4349913; -.
DR eggNOG; KOG1058; Eukaryota.
DR HOGENOM; CLU_006949_0_0_1; -.
DR InParanoid; Q53PC7; -.
DR OMA; MDYIIPA; -.
DR OrthoDB; 151169at2759; -.
DR Proteomes; UP000000763; Chromosome 11.
DR Proteomes; UP000007752; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 11.
DR ExpressionAtlas; Q53PC7; baseline and differential.
DR Genevisible; Q53PC7; OS.
DR GO; GO:0030126; C:COPI vesicle coat; IBA:GO_Central.
DR GO; GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR GO; GO:0006888; P:endoplasmic reticulum to Golgi vesicle-mediated transport; IBA:GO_Central.
DR GO; GO:0006891; P:intra-Golgi vesicle-mediated transport; IBA:GO_Central.
DR GO; GO:0006886; P:intracellular protein transport; IEA:InterPro.
DR Gene3D; 1.25.10.10; Leucine-rich Repeat Variant; 1.
DR InterPro; IPR011989; ARM-like.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR002553; Clathrin/coatomer_adapt-like_N.
DR InterPro; IPR011710; Coatomer_bsu_C.
DR InterPro; IPR016460; COPB1.
DR InterPro; IPR029446; COPB1_appendage_platform_dom.
DR PANTHER; PTHR10635; COATOMER SUBUNIT BETA; 1.
DR PANTHER; PTHR10635:SF1; COATOMER SUBUNIT BETA-1; 1.
DR Pfam; PF01602; Adaptin_N; 1.
DR Pfam; PF07718; Coatamer_beta_C; 1.
DR Pfam; PF14806; Coatomer_b_Cpla; 1.
DR PIRSF; PIRSF005727; Coatomer_beta_subunit; 1.
DR SUPFAM; SSF48371; ARM repeat; 1.
PE 2: Evidence at transcript level;
KW Cytoplasm; Cytoplasmic vesicle; ER-Golgi transport; Golgi apparatus;
KW Membrane; Protein transport; Reference proteome; Repeat; Transport.
FT CHAIN 1..953
FT /note="Coatomer subunit beta-1"
FT /id="PRO_0000285618"
FT REPEAT 49..87
FT /note="HEAT 1"
FT REPEAT 93..127
FT /note="HEAT 2"
FT REPEAT 128..165
FT /note="HEAT 3"
FT REPEAT 314..351
FT /note="HEAT 4"
FT REPEAT 393..430
FT /note="HEAT 5"
FT CONFLICT 653
FT /note="E -> G (in Ref. 6; AK069716)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 953 AA; 105438 MW; 60D73AF146DA7627 CRC64;
MEKPCTLLVH FDKGSPSMAN EIKADLEGSD VAAKVDAMKR AIMLLLNGET LPHLFITVVR
YVLPSEDHTI QKLLLLYLEI VDKRDVASGK VLPEMILICQ NLRNNLQHPN EYIRGVTLRF
LCRLNEPELL EPLIPSILAN LDHRHHFIRR HALSAISAIY RLPHGDQLLP DAPEVVERAL
TGEQDASARR NGFLMLCACA QERAVAYLLT NAERVAEWPD LLQMAAVDLI RKVCRSPNRA
DKGRYIKIII SLLSAPNSAV VYESAGALVS LSSAPTAVRA AANTYCQLLS SQSDNNVKLI
VLDRLHELRA SHRDVMVDVV MDVLRALSSP NVDVRRKVLD LVLDLLTPRN VEEVVMYLKK
EVVKTQAGDL EKGGEYRQML VQAIHSCAVE YPEVAGSVVH LLMDFLGDTN VAAAVDVVLF
VREIIETNPK LRVSMIQRLI DTFYQIRASR VCSCALWILG EYSLSLSEVE SAISTIKQCL
GDLPFYTVSE EGESTDASKP AQPVVNSVTV SSRRPVVLAD GTYATQSAAT ETAISSPAVA
PGSLSSTQNL RSLILSGDFF LAAVVACTLT KLVLRLEEVQ PSKAEANKAS TGALLIMVSI
LQLGQSSYLP HPIDNDSYDR IVLCVRLLCN TGDDVRKVWL QSCRQSFTKM LAEKQFRETE
EMKAKAQISH AQPDDLIDFY HLKSRRGMSQ LELEDAVQDD LKAATGEFTK DADDANRLNR
ILQLTGFSDP VYAEAYVTVH HYDIVLDVTV INRTKETLQN LCLELATMGD LKLVDRPQNY
TLAPESSKQI RANIKVSSTE TGVIFGNIVY ETSNVMERSV VVLNDIHIDI MDYISPATCA
DVAFRNMWAE FEWENKVAVN TVIQDEKEFL DHIIKSTNMK CLTPPSALDG ECGFIAANLY
AKSVFGEDAL VNISVEKQAD GKLSGYIRIR SKTQGIALSL GDKITLKQKG GSS
//
