ID D0LQ96_HALO1 Unreviewed; 483 AA.
AC D0LQ96;
DT 15-DEC-2009, integrated into UniProtKB/TrEMBL.
DT 15-DEC-2009, sequence version 1.
DT 27-MAR-2024, entry version 68.
DE SubName: Full=Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACY18905.1};
GN OrderedLocusNames=Hoch_6436 {ECO:0000313|EMBL:ACY18905.1};
OS Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).
OC Bacteria; Myxococcota; Polyangia; Haliangiales; Kofleriaceae; Haliangium.
OX NCBI_TaxID=502025 {ECO:0000313|EMBL:ACY18905.1, ECO:0000313|Proteomes:UP000001880};
RN [1] {ECO:0000313|EMBL:ACY18905.1, ECO:0000313|Proteomes:UP000001880}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 14365 / CIP 107738 / JCM 11303 / AJ 13395 / SMP-2
RC {ECO:0000313|Proteomes:UP000001880};
RX PubMed=21304682; DOI=10.4056/sigs.69.1277;
RG US DOE Joint Genome Institute (JGI-PGF);
RA Ivanova N., Daum C., Lang E., Abt B., Kopitz M., Saunders E., Lapidus A.,
RA Lucas S., Glavina Del Rio T., Nolan M., Tice H., Copeland A., Cheng J.F.,
RA Chen F., Bruce D., Goodwin L., Pitluck S., Mavromatis K., Pati A.,
RA Mikhailova N., Chen A., Palaniappan K., Land M., Hauser L., Chang Y.J.,
RA Jeffries C.D., Detter J.C., Brettin T., Rohde M., Goker M., Bristow J.,
RA Markowitz V., Eisen J.A., Hugenholtz P., Kyrpides N.C., Klenk H.P.;
RT "Complete genome sequence of Haliangium ochraceum type strain (SMP-2).";
RL Stand. Genomic Sci. 2:96-106(2010).
CC -!- SIMILARITY: Belongs to the short-chain fatty acyl-CoA assimilation
CC regulator (ScfR) family. {ECO:0000256|ARBA:ARBA00007227}.
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DR EMBL; CP001804; ACY18905.1; -; Genomic_DNA.
DR AlphaFoldDB; D0LQ96; -.
DR STRING; 502025.Hoch_6436; -.
DR KEGG; hoh:Hoch_6436; -.
DR eggNOG; COG1396; Bacteria.
DR eggNOG; COG3800; Bacteria.
DR HOGENOM; CLU_046383_0_0_7; -.
DR OrthoDB; 1123084at2; -.
DR Proteomes; UP000001880; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00093; HTH_XRE; 1.
DR Gene3D; 1.10.260.40; lambda repressor-like DNA-binding domains; 1.
DR InterPro; IPR001387; Cro/C1-type_HTH.
DR InterPro; IPR026281; HTH_RamB.
DR InterPro; IPR010359; IrrE_HExxH.
DR InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR InterPro; IPR018653; ScfR_C.
DR PANTHER; PTHR46797; HTH-TYPE TRANSCRIPTIONAL REGULATOR; 1.
DR PANTHER; PTHR46797:SF23; HTH-TYPE TRANSCRIPTIONAL REGULATOR PRPR; 1.
DR Pfam; PF01381; HTH_3; 1.
DR Pfam; PF06114; Peptidase_M78; 1.
DR Pfam; PF09856; ScfRs; 1.
DR PIRSF; PIRSF019251; Rv0465c; 1.
DR SMART; SM00530; HTH_XRE; 1.
DR SUPFAM; SSF47413; lambda repressor-like DNA-binding domains; 1.
DR PROSITE; PS50943; HTH_CROC1; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000001880};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 11..65
FT /note="HTH cro/C1-type"
FT /evidence="ECO:0000259|PROSITE:PS50943"
SQ SEQUENCE 483 AA; 54286 MW; 396A0B45BFB4A1C1 CRC64;
MSAEMRLGAR VRALRRRENL RQAQLAKMLE ISPSYLNLIE HDKRPLSAPL LLKLAKLFEI
DLADFAAETD AQLEADLMEV FGDPIFDDFE LSSPEVRELI STLPGVGKAV LQLYQRYREV
HQTVASISDA LSGGAAGIIN IDPLRVPTEE VSDFIQKRRN HFPALEDAAE AFSRQIELRP
DDMYHAMSNY LREAHDIHIR YVRPGDDRGA VRRFDPERRE LVLSESLPRS SRKFQIAHQI
ALLTQSEVLD HIVEGAELKT EEAQRLCRVA LANYYAGAVV MPYSRFSDSV RECRYDIELL
GNRFGVSFEQ VCHRMTTLQR PGHEGIPFHF VRADVAGNIY KRFSASGIQI SRFGGACPRW
GLHAAFLTPG TIVTQLSEMH DGSGFFCMSR TVKRGARGYH APRAVHAVTL GCQVKHARKL
VYADGVDLDN MTAAVPIGAT CRLCERMDCE QRAFPRLHQP LNIDENVRGL SFYASASDGG
DDF
//
