ID D1PLD4_9FIRM Unreviewed; 684 AA.
AC D1PLD4;
DT 09-FEB-2010, integrated into UniProtKB/TrEMBL.
DT 09-FEB-2010, sequence version 1.
DT 24-JAN-2024, entry version 39.
DE RecName: Full=Single-stranded-DNA-specific exonuclease RecJ {ECO:0000256|ARBA:ARBA00019841};
GN Name=recJ {ECO:0000313|EMBL:EFB76792.1};
GN ORFNames=SUBVAR_05173 {ECO:0000313|EMBL:EFB76792.1};
OS Subdoligranulum variabile DSM 15176.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae;
OC Subdoligranulum.
OX NCBI_TaxID=411471 {ECO:0000313|EMBL:EFB76792.1, ECO:0000313|Proteomes:UP000003438};
RN [1] {ECO:0000313|EMBL:EFB76792.1, ECO:0000313|Proteomes:UP000003438}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 15176 {ECO:0000313|EMBL:EFB76792.1,
RC ECO:0000313|Proteomes:UP000003438};
RA Weinstock G., Sodergren E., Clifton S., Fulton L., Fulton B., Courtney L.,
RA Fronick C., Harrison M., Strong C., Farmer C., Delahaunty K., Markovic C.,
RA Hall O., Minx P., Tomlinson C., Mitreva M., Nelson J., Hou S., Wollam A.,
RA Pepin K.H., Johnson M., Bhonagiri V., Nash W.E., Warren W., Chinwalla A.,
RA Mardis E.R., Wilson R.K.;
RL Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the RecJ family.
CC {ECO:0000256|ARBA:ARBA00005915}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EFB76792.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; ACBY02000020; EFB76792.1; -; Genomic_DNA.
DR AlphaFoldDB; D1PLD4; -.
DR STRING; 411471.SUBVAR_05173; -.
DR eggNOG; COG0608; Bacteria.
DR HOGENOM; CLU_009736_3_3_9; -.
DR Proteomes; UP000003438; Unassembled WGS sequence.
DR GO; GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR Gene3D; 3.10.310.30; -; 1.
DR Gene3D; 3.90.1640.30; -; 1.
DR InterPro; IPR001667; DDH_dom.
DR InterPro; IPR038763; DHH_sf.
DR InterPro; IPR003156; DHHA1_dom.
DR InterPro; IPR004610; RecJ.
DR InterPro; IPR041122; RecJ_OB.
DR NCBIfam; TIGR00644; recJ; 1.
DR PANTHER; PTHR30255; SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ; 1.
DR PANTHER; PTHR30255:SF2; SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ; 1.
DR Pfam; PF01368; DHH; 1.
DR Pfam; PF02272; DHHA1; 1.
DR Pfam; PF17768; RecJ_OB; 1.
DR SUPFAM; SSF64182; DHH phosphoesterases; 1.
PE 3: Inferred from homology;
KW Exonuclease {ECO:0000256|ARBA:ARBA00022839, ECO:0000313|EMBL:EFB76792.1};
KW Hydrolase {ECO:0000313|EMBL:EFB76792.1};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722};
KW Reference proteome {ECO:0000313|Proteomes:UP000003438}.
FT DOMAIN 87..233
FT /note="DDH"
FT /evidence="ECO:0000259|Pfam:PF01368"
FT DOMAIN 322..444
FT /note="DHHA1"
FT /evidence="ECO:0000259|Pfam:PF02272"
FT DOMAIN 459..550
FT /note="RecJ OB"
FT /evidence="ECO:0000259|Pfam:PF17768"
SQ SEQUENCE 684 AA; 73199 MW; 1E5499EFE1FD10CD CRC64;
MFGKERNTMK YPAWQIRTAE PGAEDTLAAA GCGVLLRRVL AARGIRDTET ARQMLEPAAD
LSDPFLLRDM DKAVARIGQA IEAEEPIVIY GDYDVDGISA TALLYECLSS QGAHVRCKLP
TRGSGYGLTR PALEALAQKG FTLVVTVDNG ISAVEEAACA KELGLDLVIT DHHLPGDVLP
EAVAVVDPKR ADDESPFKNL CGAGVAFKLC AALEGCNPAE LLEMYGEFVA LGTVADVMPL
VGENRVLVRE GLALLQDTMR PGLHALLESG GYAGKPVTTD TVSYGLAPRL NAAGRMDNAS
VALKLLLCGD EEQATGIAAR LAEINTERQQ TEQAVFASAC GVLEADPARL RDRVLVVAGE
DWHPGVIGIV AARLMERYSR PVIVISLHDG EGRGSGRAPD SFDLHSALAA CAENLTRFGG
HAAAAGIEIE EEKLPVFRQA INEWAARHAA RPAPAMLQLD AVVKLEELTL ENVRDLTRLA
PFGRENPTPV LLVRDAVIDG VWAMGAEGRH TRVRLRQGNH TMFASLFGVT PQKFAYPVGT
AVEAALEVSI FTGRSGPMVS AHLKGIRPAN LSNTPSEQAA WFEAFCAGAE LEPVRAEVLL
PDRSDTVMLY KRIRGGQVFA EDLQPTFAAQ GAENTGKTLA SLMALRELGL IEEQDGRWLP
VPVSGKQDLA SAPVLRKLAQ AAQR
//
