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Database: UniProt
Entry: D1YWH4_METPS
LinkDB: D1YWH4_METPS
Original site: D1YWH4_METPS 
ID   D1YWH4_METPS            Unreviewed;       116 AA.
AC   D1YWH4;
DT   09-FEB-2010, integrated into UniProtKB/TrEMBL.
DT   09-FEB-2010, sequence version 1.
DT   24-JAN-2024, entry version 55.
DE   RecName: Full=DNA-directed RNA polymerase subunit Rpo4 {ECO:0000256|HAMAP-Rule:MF_00864};
DE            EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00864};
DE   AltName: Full=DNA-directed RNA polymerase subunit F {ECO:0000256|HAMAP-Rule:MF_00864};
GN   Name=rpo4 {ECO:0000256|HAMAP-Rule:MF_00864};
GN   Synonyms=rpoF {ECO:0000256|HAMAP-Rule:MF_00864};
GN   OrderedLocusNames=MCP_0724 {ECO:0000313|EMBL:BAI60796.1};
OS   Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 /
OS   SANAE).
OC   Archaea; Euryarchaeota; Stenosarchaea group; Methanomicrobia;
OC   Methanocellales; Methanocellaceae; Methanocella.
OX   NCBI_TaxID=304371 {ECO:0000313|EMBL:BAI60796.1, ECO:0000313|Proteomes:UP000001882};
RN   [1] {ECO:0000313|Proteomes:UP000001882}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 17711 / JCM 13418 / NBRC 101707 / SANAE
RC   {ECO:0000313|Proteomes:UP000001882};
RX   PubMed=21829548; DOI=10.1371/journal.pone.0022898;
RA   Sakai S., Takaki Y., Shimamura S., Sekine M., Tajima T., Kosugi H.,
RA   Ichikawa N., Tasumi E., Hiraki A.T., Shimizu A., Kato Y., Nishiko R.,
RA   Mori K., Fujita N., Imachi H., Takai K.;
RT   "Genome sequence of a mesophilic hydrogenotrophic methanogen Methanocella
RT   paludicola, the first cultivated representative of the order
RT   Methanocellales.";
RL   PLoS ONE 6:E22898-E22898(2011).
CC   -!- FUNCTION: DNA-dependent RNA polymerase (RNAP) catalyzes the
CC       transcription of DNA into RNA using the four ribonucleoside
CC       triphosphates as substrates. This subunit is less well bound than the
CC       others. {ECO:0000256|HAMAP-Rule:MF_00864}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC         RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC         COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC         EC=2.7.7.6; Evidence={ECO:0000256|HAMAP-Rule:MF_00864};
CC   -!- SUBUNIT: Part of the RNA polymerase complex. Forms a stalk with Rpo7
CC       that extends from the main structure. {ECO:0000256|HAMAP-
CC       Rule:MF_00864}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00864}.
CC   -!- SIMILARITY: Belongs to the eukaryotic RPB4 RNA polymerase subunit
CC       family. {ECO:0000256|HAMAP-Rule:MF_00864}.
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DR   EMBL; AP011532; BAI60796.1; -; Genomic_DNA.
DR   AlphaFoldDB; D1YWH4; -.
DR   STRING; 304371.MCP_0724; -.
DR   KEGG; mpd:MCP_0724; -.
DR   eggNOG; arCOG01016; Archaea.
DR   InParanoid; D1YWH4; -.
DR   OMA; VDIMPED; -.
DR   OrthoDB; 25158at2157; -.
DR   Proteomes; UP000001882; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0000166; F:nucleotide binding; IEA:InterPro.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR   Gene3D; 6.10.140.10; -; 1.
DR   Gene3D; 1.10.150.80; HRDC domain; 1.
DR   HAMAP; MF_00864; RNApol_arch_Rpo4; 1.
DR   InterPro; IPR010997; HRDC-like_sf.
DR   InterPro; IPR044876; HRDC_dom_sf.
DR   InterPro; IPR005574; Rpb4/RPC9.
DR   InterPro; IPR010924; Rpo4.
DR   PANTHER; PTHR39646:SF1; DNA-DIRECTED RNA POLYMERASE, SUBUNIT F (RPOF); 1.
DR   PANTHER; PTHR39646; RNA POLYMERASE RPB4; 1.
DR   Pfam; PF03874; RNA_pol_Rpb4; 1.
DR   PIRSF; PIRSF005053; RNA_pol_F_arch; 1.
DR   SUPFAM; SSF47819; HRDC-like; 1.
PE   3: Inferred from homology;
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00864};
KW   DNA-directed RNA polymerase {ECO:0000256|HAMAP-Rule:MF_00864,
KW   ECO:0000313|EMBL:BAI60796.1};
KW   Nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00864};
KW   Transcription {ECO:0000256|HAMAP-Rule:MF_00864};
KW   Transferase {ECO:0000256|HAMAP-Rule:MF_00864}.
SQ   SEQUENCE   116 AA;  13414 MW;  118155C2044FFBF5 CRC64;
     MIIKKVISEE LITLPEVRDT LNAIRDEREK AGQELRYEQK RAVEHANKFS KIGAKESRDM
     VNELLTLEKM KLDIAVKIAN LCPRSKDELR AIYAKERFTL NEAELKAILD IVGKYI
//
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