ID D2SYG2_ORYGL Unreviewed; 149 AA.
AC D2SYG2;
DT 02-MAR-2010, integrated into UniProtKB/TrEMBL.
DT 02-MAR-2010, sequence version 1.
DT 27-MAR-2024, entry version 85.
DE RecName: Full=Large ribosomal subunit protein uL22c {ECO:0000256|ARBA:ARBA00035285};
DE AltName: Full=50S ribosomal protein L22, chloroplastic {ECO:0000256|ARBA:ARBA00035416};
GN Name=rpl22 {ECO:0000313|EMBL:ADB07721.1};
GN Synonyms=19493611 {ECO:0000313|EnsemblPlants:ORGLA06G0246600.1};
GN ORFNames=OrsajCp067 {ECO:0000313|EMBL:AHZ60749.1};
OS Oryza glaberrima (African rice).
OG Plastid {ECO:0000313|EMBL:ADB07721.1}.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4538 {ECO:0000313|EMBL:ADB07721.1};
RN [1] {ECO:0000313|EMBL:ADB07721.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=19683587; DOI=10.1016/j.ympev.2009.08.007;
RA Tang L., Zou X.H., Achoundong G., Potgieter C., Second G., Zhang D.Y.,
RA Ge S.;
RT "Phylogeny and biogeography of the rice tribe (Oryzeae): evidence from
RT combined analysis of 20 chloroplast fragments.";
RL Mol. Phylogenet. Evol. 54:266-277(2010).
RN [2] {ECO:0000313|Proteomes:UP000007306}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 96717 {ECO:0000313|Proteomes:UP000007306};
RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L.,
RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K.,
RA Zuccolo A.;
RT "The complete genome of Oryza glaberrima.";
RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AGY93323.1}
RP NUCLEOTIDE SEQUENCE.
RA Pilkington S.;
RL Submitted (JUL-2013) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:AHZ60749.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=24690362; DOI=10.1111/1755-0998.12258;
RA Mariac C., Scarcelli N., Pouzadou J., Barnaud A., Billot C., Faye A.,
RA Kougbeadjo A., Maillol V., Martin G., Sabot F., Santoni S., Vigouroux Y.,
RA Couvreur T.L.;
RT "Cost-effective enrichment hybridization capture of chloroplast genomes at
RT deep multiplexing levels for population genetics and phylogeography
RT studies.";
RL Mol. Ecol. Resour. 14:1103-1113(2014).
RN [5] {ECO:0000313|EMBL:AJC09478.1}
RP NUCLEOTIDE SEQUENCE.
RA Chen X.-L., Norrbom A., Zhu C.-D.;
RT "A systematic study of Ichneumonosoma Meijere, Pelmatops Enderlein,
RT Pseudopelmatops Shiraki and Soita Walker (Diptera: Tephritidae).";
RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases.
RN [6] {ECO:0000313|EMBL:AJC99782.1}
RP NUCLEOTIDE SEQUENCE.
RA Kim K.-H., Lee J.-K., Yang K.-W., Lee S.-C., Yang T.-J.;
RT "High throughput and simultaneous assembly of complete chloroplast genome
RT and nrDNA in plant.";
RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases.
RN [7] {ECO:0000313|EMBL:AJC10152.1}
RP NUCLEOTIDE SEQUENCE.
RA Kim K.-H., Kim Y.-D., Yang T.-J.;
RT "High-throughput assembly of chloroplast and ribosomal DNAs in plant
RT genomes.";
RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases.
RN [8] {ECO:0000313|EMBL:AJP33937.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=101328 {ECO:0000313|EMBL:AJP34018.1}, and 104040
RC {ECO:0000313|EMBL:AJP33937.1};
RX PubMed=26355750; DOI=10.1038/srep13957;
RA Wambugu P.W., Brozynska M., Furtado A., Waters D.L., Henry R.J.;
RT "Relationships of wild and domesticated rices (Oryza AA genome species)
RT based upon whole chloroplast genome sequences.";
RL Sci. Rep. 5:13957-13957(2015).
RN [9] {ECO:0000313|EnsemblPlants:ORGLA06G0246600.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (JUN-2015) to UniProtKB.
CC -!- SUBUNIT: Part of the 50S ribosomal subunit.
CC {ECO:0000256|ARBA:ARBA00011838}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL22 family.
CC {ECO:0000256|ARBA:ARBA00009451, ECO:0000256|RuleBase:RU004005}.
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DR EMBL; FJ908435; ADB07721.1; -; Genomic_DNA.
DR EMBL; KF359903; AGY93323.1; -; Genomic_DNA.
DR EMBL; KJ513090; AHZ60749.1; -; Genomic_DNA.
DR EMBL; KM103370; AJC09478.1; -; Genomic_DNA.
DR EMBL; KM103377; AJC10152.1; -; Genomic_DNA.
DR EMBL; KM088021; AJC99782.1; -; Genomic_DNA.
DR EMBL; KM881638; AJP33937.1; -; Genomic_DNA.
DR EMBL; KM881639; AJP34018.1; -; Genomic_DNA.
DR RefSeq; YP_009034136.1; NC_024175.1.
DR AlphaFoldDB; D2SYG2; -.
DR SMR; D2SYG2; -.
DR STRING; 4538.D2SYG2; -.
DR EnsemblPlants; ORGLA06G0246600.1; ORGLA06G0246600.1; ORGLA06G0246600.
DR EnsemblPlants; ORGLA06G0259500.1; ORGLA06G0259500.1; ORGLA06G0259500.
DR EnsemblPlants; ORGLA06G0268600.1; ORGLA06G0268600.1; ORGLA06G0268600.
DR EnsemblPlants; ORGLA08G0206700.1; ORGLA08G0206700.1; ORGLA08G0206700.
DR EnsemblPlants; ORGLA11G0190900.1; ORGLA11G0190900.1; ORGLA11G0190900.
DR EnsemblPlants; ORGLA12G0179400.1; ORGLA12G0179400.1; ORGLA12G0179400.
DR GeneID; 19493611; -.
DR Gramene; ORGLA06G0246600.1; ORGLA06G0246600.1; ORGLA06G0246600.
DR Gramene; ORGLA06G0259500.1; ORGLA06G0259500.1; ORGLA06G0259500.
DR Gramene; ORGLA06G0268600.1; ORGLA06G0268600.1; ORGLA06G0268600.
DR Gramene; ORGLA08G0206700.1; ORGLA08G0206700.1; ORGLA08G0206700.
DR Gramene; ORGLA11G0190900.1; ORGLA11G0190900.1; ORGLA11G0190900.
DR Gramene; ORGLA12G0179400.1; ORGLA12G0179400.1; ORGLA12G0179400.
DR KEGG; ogl:19493611; -.
DR eggNOG; KOG1711; Eukaryota.
DR HOGENOM; CLU_1878437_0_0_1; -.
DR OMA; HISMSAD; -.
DR Proteomes; UP000007306; Unassembled WGS sequence.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-KW.
DR GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR CDD; cd00336; Ribosomal_L22; 1.
DR Gene3D; 3.90.470.10; Ribosomal protein L22/L17; 1.
DR HAMAP; MF_01331_B; Ribosomal_L22_B; 1.
DR InterPro; IPR001063; Ribosomal_uL22.
DR InterPro; IPR005727; Ribosomal_uL22_bac/chlpt-type.
DR InterPro; IPR047867; Ribosomal_uL22_bac/org-type.
DR InterPro; IPR018260; Ribosomal_uL22_CS.
DR InterPro; IPR036394; Ribosomal_uL22_sf.
DR NCBIfam; TIGR01044; rplV_bact; 1.
DR PANTHER; PTHR13501:SF10; 50S RIBOSOMAL PROTEIN L22, CHLOROPLASTIC; 1.
DR PANTHER; PTHR13501; CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED; 1.
DR Pfam; PF00237; Ribosomal_L22; 1.
DR SUPFAM; SSF54843; Ribosomal protein L22; 1.
DR PROSITE; PS00464; RIBOSOMAL_L22; 1.
PE 3: Inferred from homology;
KW Chloroplast {ECO:0000313|EMBL:ADB07721.1};
KW Plastid {ECO:0000313|EMBL:ADB07721.1};
KW Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274,
KW ECO:0000256|RuleBase:RU004005};
KW Ribosomal protein {ECO:0000256|ARBA:ARBA00022980,
KW ECO:0000256|RuleBase:RU004005};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884};
KW rRNA-binding {ECO:0000256|ARBA:ARBA00022730}.
SQ SEQUENCE 149 AA; 17683 MW; 25E0938943E209F2 CRC64;
MTSFKLVKYT PRIKKKKSGL RKLARKVPTD RLLKFERVFK AQKRIHMSVF KVQRVLDEIR
WRYYEETVMI LNLMPYRASY PILKLVYSAA ANATHYRDFD KANLFITKAE VSRSTIMNKF
RPRARGRSSP IKKTMCHITI VLNIVKKSK
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