ID D3T1I7_NATMM Unreviewed; 537 AA.
AC D3T1I7;
DT 20-APR-2010, integrated into UniProtKB/TrEMBL.
DT 20-APR-2010, sequence version 1.
DT 24-JAN-2024, entry version 75.
DE SubName: Full=PAS/PAC sensor protein {ECO:0000313|EMBL:ELY32253.1};
DE SubName: Full=Sensor/bat box HTH-10 family transcription regulator {ECO:0000313|EMBL:ADD07446.1};
GN OrderedLocusNames=Nmag_3905 {ECO:0000313|EMBL:ADD07446.1};
GN ORFNames=C500_04224 {ECO:0000313|EMBL:ELY32253.1};
OS Natrialba magadii (strain ATCC 43099 / DSM 3394 / CCM 3739 / CIP 104546 /
OS IAM 13178 / JCM 8861 / NBRC 102185 / NCIMB 2190 / MS3) (Natronobacterium
OS magadii).
OG Plasmid pNMAG01 {ECO:0000313|EMBL:ADD07446.1,
OG ECO:0000313|Proteomes:UP000001879}.
OC Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales;
OC Natrialbaceae; Natrialba.
OX NCBI_TaxID=547559 {ECO:0000313|EMBL:ADD07446.1, ECO:0000313|Proteomes:UP000001879};
RN [1] {ECO:0000313|Proteomes:UP000001879}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 43099 / DSM 3394 / CCM 3739 / CIP 104546 / IAM 13178 / JCM
RC 8861 / NBRC 102185 / NCIMB 2190 / MS3
RC {ECO:0000313|Proteomes:UP000001879};
RC PLASMID=pNMAG01 {ECO:0000313|Proteomes:UP000001879};
RG US DOE Joint Genome Institute;
RA Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L.,
RA Pitluck S., Davenport K., Saunders E., Detter J.C., Han C., Tapia R.,
RA Land M., Hauser L., Kyrpides N., Mikhailova N., De Castro R.E.,
RA Maupin-Furlow J.A., Woyke T.;
RT "Complete sequence of plasmid 1 of Natrialba magadii ATCC 43099.";
RL Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ADD07446.1, ECO:0000313|Proteomes:UP000001879}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 43099 {ECO:0000313|EMBL:ADD07446.1}, and ATCC 43099 / DSM
RC 3394 / CCM 3739 / CIP 104546 / IAM 13178 / JCM 8861 / NBRC 102185 /
RC NCIMB 2190 / MS3 {ECO:0000313|Proteomes:UP000001879};
RX PubMed=22559199; DOI=10.1186/1471-2164-13-165;
RA Siddaramappa S., Challacombe J.F., Decastro R.E., Pfeiffer F., Sastre D.E.,
RA Gimenez M.I., Paggi R.A., Detter J.C., Davenport K.W., Goodwin L.A.,
RA Kyrpides N., Tapia R., Pitluck S., Lucas S., Woyke T., Maupin-Furlow J.A.;
RT "A comparative genomics perspective on the genetic content of the
RT alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T.";
RL BMC Genomics 13:165-165(2012).
RN [3] {ECO:0000313|EMBL:ELY32253.1, ECO:0000313|Proteomes:UP000011543}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 43099 / DSM 3394 / CCM 3739 / CIP 104546 / IAM 13178 / JCM
RC 8861 / NBRC 102185 / NCIMB 2190 / MS3
RC {ECO:0000313|Proteomes:UP000011543}, and MS-3
RC {ECO:0000313|EMBL:ELY32253.1};
RX PubMed=25393412; DOI=10.1371/journal.pgen.1004784;
RA Becker E.A., Seitzer P.M., Tritt A., Larsen D., Krusor M., Yao A.I., Wu D.,
RA Madern D., Eisen J.A., Darling A.E., Facciotti M.T.;
RT "Phylogenetically driven sequencing of extremely halophilic archaea reveals
RT strategies for static and dynamic osmo-response.";
RL PLoS Genet. 10:E1004784-E1004784(2014).
RN [4] {ECO:0000313|EMBL:ADD07446.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=ATCC 43099 {ECO:0000313|EMBL:ADD07446.1};
RC PLASMID=pNMAG01 {ECO:0000313|EMBL:ADD07446.1};
RA Pfeiffer F.;
RL Submitted (SEP-2016) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CP001933; ADD07446.1; -; Genomic_DNA.
DR EMBL; AOHS01000017; ELY32253.1; -; Genomic_DNA.
DR RefSeq; WP_004214438.1; NZ_AOHS01000017.1.
DR AlphaFoldDB; D3T1I7; -.
DR GeneID; 8826775; -.
DR KEGG; nmg:Nmag_3905; -.
DR PATRIC; fig|547559.17.peg.808; -.
DR HOGENOM; CLU_010057_3_0_2; -.
DR OrthoDB; 234125at2157; -.
DR Proteomes; UP000001879; Plasmid pNMAG01.
DR Proteomes; UP000011543; Unassembled WGS sequence.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.450.20; PAS domain; 1.
DR InterPro; IPR031803; BAT_GAF/HTH-assoc.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR007050; HTH_bacterioopsin.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013656; PAS_4.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR34236; DIMETHYL SULFOXIDE REDUCTASE TRANSCRIPTIONAL ACTIVATOR; 1.
DR PANTHER; PTHR34236:SF1; DIMETHYL SULFOXIDE REDUCTASE TRANSCRIPTIONAL ACTIVATOR; 1.
DR Pfam; PF15915; BAT; 1.
DR Pfam; PF13185; GAF_2; 1.
DR Pfam; PF04967; HTH_10; 1.
DR Pfam; PF08448; PAS_4; 1.
DR SUPFAM; SSF55781; GAF domain-like; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
PE 4: Predicted;
KW Plasmid {ECO:0000313|EMBL:ADD07446.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000001879};
KW Transcription {ECO:0000256|ARBA:ARBA00023015};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 12..123
FT /note="PAS fold-4"
FT /evidence="ECO:0000259|Pfam:PF08448"
FT DOMAIN 166..308
FT /note="GAF"
FT /evidence="ECO:0000259|Pfam:PF13185"
FT DOMAIN 320..471
FT /note="Bacterioopsin transcriptional activator GAF and HTH
FT associated"
FT /evidence="ECO:0000259|Pfam:PF15915"
FT DOMAIN 479..530
FT /note="HTH bat-type"
FT /evidence="ECO:0000259|Pfam:PF04967"
SQ SEQUENCE 537 AA; 58961 MW; 7B9CDD032F3EB853 CRC64;
MSTKNELAAA TLETLPVTVA VLGSDGEILL TNQEWRTFGP NEQPSDHVGV DYLAVASTTD
DEHASRAVTG LESLLAGDQQ TFTMEYPCHS PGEKRWFSMW ARQFSVDGER HVVVVHLDIT
DRKLAEIDAE ESATRVRAER QALEDVLERV DGLIRDVTDA AVTAGTRTEI ERRVCRRLAA
ESPYELAWIG RVDVTNRQIT PSEWASQDEV PLENNQLTLG QDESHPAVAA LERGDSRVVS
DLDSFEAAEQ WWPIAAGEYI DAVAAVPIAY GEVTYGVLVV FAAETNAFAD RDVLILESLA
GTIATAINAL ETRRMLTTEA VVELELAIED SSLFVTALAD DLAATVTFRG VAYDGDGTPL
AFVHVDRPEA VAVTAADSHG ITDATVLSAT DDGTLLELTL DSSGSFVSTL AEHGAVIRHL
ETDSGVADMA LELPNAQSGR SMYDYLEDRF EQVELISYQE VERPAQTAQD LMSTLESALT
ERQRMALRKA YYAEYFEWPR SISGEELAAS MDISRSTYHQ HLRLAQQKLL DELFEGE
//
