ID D3V9X3_XENNA Unreviewed; 357 AA.
AC D3V9X3;
DT 20-APR-2010, integrated into UniProtKB/TrEMBL.
DT 20-APR-2010, sequence version 1.
DT 27-MAR-2024, entry version 68.
DE SubName: Full=tRNA/rRNA methyltransferase {ECO:0000313|EMBL:CBJ89361.1};
DE EC=2.1.1.- {ECO:0000313|EMBL:CBJ89361.1};
GN Name=yfiF {ECO:0000313|EMBL:CBJ89361.1};
GN OrderedLocusNames=XNC1_1296 {ECO:0000313|EMBL:CBJ89361.1};
OS Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / CCUG 14189 / LMG
OS 1036 / NCIMB 9965 / AN6).
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
OC Morganellaceae; Xenorhabdus.
OX NCBI_TaxID=406817 {ECO:0000313|EMBL:CBJ89361.1, ECO:0000313|Proteomes:UP000008075};
RN [1] {ECO:0000313|EMBL:CBJ89361.1, ECO:0000313|Proteomes:UP000008075}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 19061 / DSM 3370 / CCUG 14189 / LMG 1036 / NCIMB 9965 /
RC AN6 {ECO:0000313|Proteomes:UP000008075};
RX PubMed=22125637; DOI=10.1371/journal.pone.0027909;
RA Chaston J.M., Suen G., Tucker S.L., Andersen A.W., Bhasin A., Bode E.,
RA Bode H.B., Brachmann A.O., Cowles C.E., Cowles K.N., Darby C., de Leon L.,
RA Drace K., Du Z., Givaudan A., Herbert Tran E.E., Jewell K.A., Knack J.J.,
RA Krasomil-Osterfeld K.C., Kukor R., Lanois A., Latreille P.,
RA Leimgruber N.K., Lipke C.M., Liu R., Lu X., Martens E.C., Marri P.R.,
RA Medigue C., Menard M.L., Miller N.M., Morales-Soto N., Norton S.,
RA Ogier J.C., Orchard S.S., Park D., Park Y., Qurollo B.A., Sugar D.R.,
RA Richards G.R., Rouy Z., Slominski B., Slominski K., Snyder H., Tjaden B.C.,
RA van der Hoeven R., Welch R.D., Wheeler C., Xiang B., Barbazuk B.,
RA Gaudriault S., Goodner B., Slater S.C., Forst S., Goldman B.S.,
RA Goodrich-Blair H.;
RT "The entomopathogenic bacterial endosymbionts xenorhabdus and photorhabdus:
RT convergent lifestyles from divergent genomes.";
RL PLoS ONE 6:E27909-E27909(2011).
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DR EMBL; FN667742; CBJ89361.1; -; Genomic_DNA.
DR RefSeq; WP_010848714.1; NC_014228.1.
DR AlphaFoldDB; D3V9X3; -.
DR STRING; 406817.XNC1_1296; -.
DR KEGG; xne:XNC1_1296; -.
DR eggNOG; COG0566; Bacteria.
DR HOGENOM; CLU_021322_2_1_6; -.
DR Proteomes; UP000008075; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProt.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008173; F:RNA methyltransferase activity; IEA:InterPro.
DR GO; GO:0032259; P:methylation; IEA:UniProtKB-KW.
DR GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR CDD; cd18095; SpoU-like_rRNA-MTase; 1.
DR Gene3D; 3.30.1330.30; -; 1.
DR Gene3D; 3.40.1280.10; -; 1.
DR InterPro; IPR029028; Alpha/beta_knot_MTases.
DR InterPro; IPR029064; Ribosomal_eL30-like_sf.
DR InterPro; IPR004441; rRNA_MeTrfase_TrmH.
DR InterPro; IPR001537; SpoU_MeTrfase.
DR InterPro; IPR013123; SpoU_subst-bd.
DR InterPro; IPR029026; tRNA_m1G_MTases_N.
DR InterPro; IPR016479; YfiF_prd.
DR PANTHER; PTHR46429; 23S RRNA (GUANOSINE-2'-O-)-METHYLTRANSFERASE RLMB; 1.
DR PANTHER; PTHR46429:SF2; TRNA_RRNA METHYLTRANSFERASE-RELATED; 1.
DR Pfam; PF00588; SpoU_methylase; 1.
DR Pfam; PF08032; SpoU_sub_bind; 1.
DR PIRSF; PIRSF006280; YfiF_prd; 1.
DR SMART; SM00967; SpoU_sub_bind; 1.
DR SUPFAM; SSF75217; alpha/beta knot; 1.
DR SUPFAM; SSF55315; L30e-like; 1.
PE 4: Predicted;
KW Methyltransferase {ECO:0000256|ARBA:ARBA00022603,
KW ECO:0000313|EMBL:CBJ89361.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000008075};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000313|EMBL:CBJ89361.1}.
FT DOMAIN 120..195
FT /note="RNA 2-O ribose methyltransferase substrate binding"
FT /evidence="ECO:0000259|SMART:SM00967"
FT REGION 1..110
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 14..97
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 357 AA; 39751 MW; 68CB2A438C1AA2F7 CRC64;
MNDSYSGKNG KVKVMYVRNE DSNDSRRDND RDRNNGRGRN NDRRRNSDSY KDDKRSFGKG
RDQGDRRRDS DRPARSGDRS PWRTVSRPEE ESLKPDHGGI SGKSYIDPEQ LRRQRLEETR
IYGENACLAM FQNRPDAIVR AWFVQSVTPR FRNALKWMAA NRKAYHVVDD QELAKASGTE
HHGGVCFLIK KRNGLGVETY LQQAPAKDCV LALENVGNPH NLGAIMRSCA HFGVQGVVLQ
DTAMLESGAA VRTAEGGAEH IKGIDADGFT DTLNKFRNEG YTIVTTSSHK GSTALAQATL
PEKMVLVLGQ ESDGLSDSIW EDGDIRLSIG GTGRVESLNV SVATGILLAE WWRQNKV
//
