ID D5STM3_PLAL2 Unreviewed; 662 AA.
AC D5STM3;
DT 13-JUL-2010, integrated into UniProtKB/TrEMBL.
DT 13-JUL-2010, sequence version 1.
DT 27-MAR-2024, entry version 72.
DE SubName: Full=Sigma-54 factor interaction domain-containing protein {ECO:0000313|EMBL:ADG69052.1};
GN OrderedLocusNames=Plim_3238 {ECO:0000313|EMBL:ADG69052.1};
OS Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 / Mu 290)
OS (Planctomyces limnophilus).
OC Bacteria; Planctomycetota; Planctomycetia; Planctomycetales;
OC Planctomycetaceae; Planctopirus.
OX NCBI_TaxID=521674 {ECO:0000313|EMBL:ADG69052.1, ECO:0000313|Proteomes:UP000002220};
RN [1] {ECO:0000313|EMBL:ADG69052.1, ECO:0000313|Proteomes:UP000002220}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 43296 / DSM 3776 / IFAM 1008 / 290
RC {ECO:0000313|Proteomes:UP000002220};
RX PubMed=21304691; DOI=10.4056/sigs.1052813;
RA Labutti K., Sikorski J., Schneider S., Nolan M., Lucas S.,
RA Glavina Del Rio T., Tice H., Cheng J.F., Goodwin L., Pitluck S.,
RA Liolios K., Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A.,
RA Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.D.,
RA Tindall B.J., Rohde M., Goker M., Woyke T., Bristow J., Eisen J.A.,
RA Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Lapidus A.;
RT "Complete genome sequence of Planctomyces limnophilus type strain (Mu
RT 290).";
RL Stand. Genomic Sci. 3:47-56(2010).
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DR EMBL; CP001744; ADG69052.1; -; Genomic_DNA.
DR RefSeq; WP_013111483.1; NC_014148.1.
DR AlphaFoldDB; D5STM3; -.
DR STRING; 521674.Plim_3238; -.
DR KEGG; plm:Plim_3238; -.
DR eggNOG; COG3829; Bacteria.
DR HOGENOM; CLU_000445_95_2_0; -.
DR OrthoDB; 9761019at2; -.
DR Proteomes; UP000002220; Chromosome.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00065; GAF; 1.
DR SUPFAM; SSF55781; GAF domain-like; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000002220};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 345..574
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 662 AA; 73368 MW; 99BF9E220DCE1B9B CRC64;
MAAGWLSRNE FRQAAEFPDL PEFSVWQQEV FQLLPRATSI DAFGREVAAR LAGLLGVSYV
AIWQRSPAWA SMVQYGRLAN DDLPQSLMIE ALDRDAATIG VKASGSCLVA PLPQEDGLSS
LGTAVLVIHG KNLHDKQLPS AMFAAQTFAT ALAVCQKTIK AQERAEKLRE ILKLAAQLAN
EQQTEKLLTR IAEEATRLLD CDRASIFIWD REHHEVIACP ALGVEGGSLR LSDKVGVVGE
VIAKVQLIRV DDAYADPRFH RKVDASSGYK TSNLLCGPLR DLDGKVLGAF EVINHRQGPF
SQEDEITLLD LCIQIAAALQ NTRERELLVT SNRQLTEQVS RGVNIVGESP AIVAMRSTIR
RLAGTDLPVL ILGESGTGKE VVASSLHYQG SRADRPFIAV NCAALTETLL ESELFGHERG
SFTDAHEMRR GKFELAEGGT IFLDEIGDLS AGGQAKLLRV LEQKVITRVG GSQTIPINAR
VIAATNARLA EAVRAKKFRE DLYFRLNVVT LEIPPLRERA DDVLPLAEYF LEQFAVQARR
GKMHLSAEAR RRLQSHAWPG NVRELRNLME RVAFLAPAER IEVEDLAFIL SPERDSFHEP
SLDMGLSEAT NSFQQEYIRR AIKRVRNNMS EAARLLGLHR SNLYRKMRQL DMAEAGDGEE
EE
//
