ID D6YQU6_PANVC Unreviewed; 393 AA.
AC D6YQU6;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 56.
DE SubName: Full=Xylose repressor {ECO:0000313|EMBL:ADI78379.1};
GN Name=xylR {ECO:0000313|EMBL:ADI78379.1};
GN OrderedLocusNames=Pvag_pPag30310 {ECO:0000313|EMBL:ADI78379.1};
OS Pantoea vagans (strain C9-1) (Pantoea agglomerans (strain C9-1)).
OG Plasmid pPag3 {ECO:0000313|EMBL:ADI78379.1,
OG ECO:0000313|Proteomes:UP000006631}.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
OC Erwiniaceae; Pantoea.
OX NCBI_TaxID=712898 {ECO:0000313|EMBL:ADI78379.1, ECO:0000313|Proteomes:UP000006631};
RN [1] {ECO:0000313|EMBL:ADI78379.1, ECO:0000313|Proteomes:UP000006631}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=C9-1 {ECO:0000313|EMBL:ADI78379.1,
RC ECO:0000313|Proteomes:UP000006631};
RC PLASMID=pPag3 {ECO:0000313|EMBL:ADI78379.1};
RX PubMed=20487014; DOI=10.1111/j.1574-6968.2010.01994.x;
RA Smits T.H., Rezzonico F., Pelludat C., Goesmann A., Frey J.E., Duffy B.;
RT "Genomic and phenotypic characterization of a nonpigmented variant of
RT Pantoea vagans biocontrol strain C9-1 lacking the 530-kb megaplasmid
RT pPag3.";
RL FEMS Microbiol. Lett. 308:48-54(2010).
RN [2] {ECO:0000313|EMBL:ADI78379.1, ECO:0000313|Proteomes:UP000006631}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=C9-1 {ECO:0000313|EMBL:ADI78379.1,
RC ECO:0000313|Proteomes:UP000006631};
RC PLASMID=pPag3 {ECO:0000313|EMBL:ADI78379.1};
RX PubMed=20952567; DOI=10.1128/JB.01122-10;
RA Smits T.H., Rezzonico F., Kamber T., Goesmann A., Ishimaru C.A.,
RA Stockwell V.O., Frey J.E., Duffy B.;
RT "The genome sequence of the biocontrol agent Pantoea vagans strain C9-1.";
RL J. Bacteriol. 192:6486-6487(2010).
CC -!- SIMILARITY: Belongs to the ROK (NagC/XylR) family.
CC {ECO:0000256|ARBA:ARBA00006479}.
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DR EMBL; CP001895; ADI78379.1; -; Genomic_DNA.
DR AlphaFoldDB; D6YQU6; -.
DR KEGG; pva:Pvag_pPag30310; -.
DR HOGENOM; CLU_036604_13_0_6; -.
DR Proteomes; UP000006631; Plasmid pPag3.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR CDD; cd00012; NBD_sugar-kinase_HSP70_actin; 1.
DR Gene3D; 3.30.420.40; -; 2.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR043129; ATPase_NBD.
DR InterPro; IPR012318; HTH_CRP.
DR InterPro; IPR000835; HTH_MarR-typ.
DR InterPro; IPR000600; ROK.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR18964:SF177; N-ACETYLMANNOSAMINE KINASE; 1.
DR PANTHER; PTHR18964; ROK (REPRESSOR, ORF, KINASE) FAMILY; 1.
DR Pfam; PF12802; MarR_2; 1.
DR Pfam; PF00480; ROK; 1.
DR SMART; SM00419; HTH_CRP; 1.
DR SUPFAM; SSF53067; Actin-like ATPase domain; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS01125; ROK; 1.
PE 3: Inferred from homology;
KW Plasmid {ECO:0000313|EMBL:ADI78379.1}.
FT DOMAIN 25..79
FT /note="HTH crp-type"
FT /evidence="ECO:0000259|SMART:SM00419"
SQ SEQUENCE 393 AA; 42624 MW; 17891A14EC15FECE CRC64;
MENNMKTSGT NLEHARAHNR RVVIEAIRLH GELTRAELAR MTALTPQTVS NIVAELEQAG
LLTSRQPRRS GRGQPSIPVT LNPTSAWSIG IHLDHQTLLL VLVDLSGEVH FRRLVLVQKP
QPAATLACIA GVLEEMRAFL GTQWKKVLGI GVVMPGPFGV EGISSVGPTT LNGWEQVDIE
AELAALSGLP VTLENDATVA AIGERFHGTA RHLNSFIYLY IGTGLGAGIF TDGHIYTGHA
HNAGEIGHIV VEPGGRDCYC GNQGCLERYV SLQAAYEFCG LDPMRALPED LLQIEPARFT
AWIESVITPL RQAINILESV FDAEAVIIGG MMPAPLLEQM VARLPPLYQS VRGRYLLDMR
LKTGMTGSDT AALGAAALPI FDEFNPQFQV LMK
//
