ID D7A082_STAND Unreviewed; 675 AA.
AC D7A082;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 72.
DE SubName: Full=GAF modulated sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:ADH89343.1};
GN OrderedLocusNames=Snov_2045 {ECO:0000313|EMBL:ADH89343.1};
OS Starkeya novella (strain ATCC 8093 / DSM 506 / JCM 20403 / CCM 1077 / IAM
OS 12100 / NBRC 12443 / NCIMB 10456).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC Xanthobacteraceae; Ancylobacter.
OX NCBI_TaxID=639283 {ECO:0000313|EMBL:ADH89343.1, ECO:0000313|Proteomes:UP000006633};
RN [1] {ECO:0000313|EMBL:ADH89343.1, ECO:0000313|Proteomes:UP000006633}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 8093 / DSM 506 / JCM 20403 / CCM 1077 / IAM 12100 / NBRC
RC 12443 / NCIMB 10456 {ECO:0000313|Proteomes:UP000006633};
RX PubMed=23450099; DOI=10.4056/sigs.3006378;
RA Kappler U., Davenport K., Beatson S., Lucas S., Lapidus A., Copeland A.,
RA Berry K.W., Glavina Del Rio T., Hammon N., Dalin E., Tice H., Pitluck S.,
RA Richardson P., Bruce D., Goodwin L.A., Han C., Tapia R., Detter J.C.,
RA Chang Y.J., Jeffries C.D., Land M., Hauser L., Kyrpides N.C., Goker M.,
RA Ivanova N., Klenk H.P., Woyke T.;
RT "Complete genome sequence of the facultatively chemolithoautotrophic and
RT methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC
RT 8093(T)).";
RL Stand. Genomic Sci. 7:44-58(2012).
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DR EMBL; CP002026; ADH89343.1; -; Genomic_DNA.
DR RefSeq; WP_013166847.1; NC_014217.1.
DR AlphaFoldDB; D7A082; -.
DR STRING; 639283.Snov_2045; -.
DR KEGG; sno:Snov_2045; -.
DR eggNOG; COG3284; Bacteria.
DR HOGENOM; CLU_000445_8_12_5; -.
DR OrthoDB; 9762726at2; -.
DR Proteomes; UP000006633; Chromosome.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR PANTHER; PTHR32071:SF77; TRANSCRIPTIONAL REGULATORY PROTEIN GLRR; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW Activator {ECO:0000256|ARBA:ARBA00023159};
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Two-component regulatory system {ECO:0000256|ARBA:ARBA00023012}.
FT DOMAIN 345..571
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
FT REGION 308..346
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 675 AA; 72602 MW; E40DF3BC3FC9FAB8 CRC64;
MLDLRSHVSR IVSSANQLVV TPGDFRAPRA ADAMAASWRR CMEGYRFDPG AKFRIEAVSD
AELKQQRQAN DELIHFARPE MDAIFGAVSL SGFSISLGNV DGYIISERAN YNPEFYSDVE
RPGTAWAERS AGTNAIGTCL VERLPVGVYT NDHFFYDFSA LSCASAPLFS PDDELIGAIN
ISIRNPELQR ETLKVVLGLT SGLADRIGER MFRQAFRRNY ILKFATGPVD HGLIAVDDDF
QLVGLNHAAR AMLSDRVQLA RVRSLWAVFE RDHRLIDLAR LGGAELTLHL QKGGDAITVS
LSGPTEVLSA GSRPAASAEP AARPRPTPAP APVRPSTSLL TLDDCAGSDP RMATNVRFVR
RVLGGSLPIL LLGETGVGKD AFARAVHEES PRRAAPFVAF NCASVPDTLI DSELFGYGSG
AFTGARREGS PGRLVEADGG TLFLDEIGDM PVSQQTRLLH VLESGEVTPL GSGKPRRIDV
QVIAATNQNL EAQIARGLFR QDLYYRLAGA VIDIPALRER TDRRELIEAV FASLADGRRL
SLAPDALAML MNHDWPGNVR ELRHVLNRAV HVCEGAELTA RDIAIRTGAR APSMPAAVAP
GPVAAAPGTA VPGTVAPGEE VEAAGSARHA IAAAERDAIL ATLARCGGNV KAAAVALQLS
RATLYRKLQR YQIVH
//
