ID D7KG04_ARALL Unreviewed; 341 AA.
AC D7KG04;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 44.
DE RecName: Full=SWIM-type domain-containing protein {ECO:0000259|PROSITE:PS50966};
GN ORFNames=ARALYDRAFT_887817 {ECO:0000313|EMBL:EFH65849.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
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DR EMBL; GL348713; EFH65849.1; -; Genomic_DNA.
DR RefSeq; XP_002889590.1; XM_002889544.1.
DR AlphaFoldDB; D7KG04; -.
DR EnsemblPlants; scaffold_100611.1; scaffold_100611.1; scaffold_100611.1.
DR GeneID; 9325654; -.
DR Gramene; scaffold_100611.1; scaffold_100611.1; scaffold_100611.1.
DR KEGG; aly:9325654; -.
DR HOGENOM; CLU_814685_0_0_1; -.
DR OrthoDB; 693875at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR InterPro; IPR017956; AT_hook_DNA-bd_motif.
DR InterPro; IPR006564; Znf_PMZ.
DR InterPro; IPR007527; Znf_SWIM.
DR PANTHER; PTHR31973:SF191; MUTATOR TRANSPOSASE MUDRA PROTEIN; 1.
DR PANTHER; PTHR31973; POLYPROTEIN, PUTATIVE-RELATED; 1.
DR Pfam; PF04434; SWIM; 1.
DR PRINTS; PR00929; ATHOOK.
DR SMART; SM00384; AT_hook; 3.
DR SMART; SM00575; ZnF_PMZ; 1.
DR PROSITE; PS50966; ZF_SWIM; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00325};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00325}.
FT DOMAIN 62..95
FT /note="SWIM-type"
FT /evidence="ECO:0000259|PROSITE:PS50966"
FT REGION 134..174
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 187..287
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 155..169
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 220..242
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 341 AA; 37994 MW; 32C8909C36BA47B2 CRC64;
MVSNEKKRAE AEKAKGEYTP RSRALLDQQI DLAKNCRPLS CGLGNYEVAY FNYKTNLRTD
GFIVQMRGVV SCSCRMYLVS GIPCSHIISC LRHEKNSDQD PKTLISPWFT TEKLKRCYLN
LMKPVNGMNL WRITSAPRVK PPPFKKPSGR PPGKKRKKEK GEPRDAKKMT KRGTKIHCGL
CGVEGHNKLK CKTGPKPKPP PKPPGRPRKR PFASISEAEP SLPSLPSLPS FPSQSNEVED
LPSLSSALPK RGRGRPRKSQ FDGASSSQPP PERTEPMYDT GPRTLLREGY GVFTSPVTGD
DYIHVGRSVV DTRDNTVLPS TLYAARERKK LAVGRGRGKK K
//
