ID D7L0I8_ARALL Unreviewed; 664 AA.
AC D7L0I8;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 58.
DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EFH59043.1};
GN ORFNames=ARALYDRAFT_672083 {ECO:0000313|EMBL:EFH59043.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
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DR EMBL; GL348715; EFH59043.1; -; Genomic_DNA.
DR RefSeq; XP_002882784.1; XM_002882738.1.
DR AlphaFoldDB; D7L0I8; -.
DR STRING; 81972.D7L0I8; -.
DR EnsemblPlants; Al_scaffold_0003_1280; Al_scaffold_0003_1280; Al_scaffold_0003_1280.
DR GeneID; 9318850; -.
DR Gramene; Al_scaffold_0003_1280; Al_scaffold_0003_1280; Al_scaffold_0003_1280.
DR KEGG; aly:9318850; -.
DR eggNOG; KOG3702; Eukaryota.
DR HOGENOM; CLU_027028_0_0_1; -.
DR OrthoDB; 1123096at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0008143; F:poly(A) binding; IEA:InterPro.
DR GO; GO:0006397; P:mRNA processing; IEA:InterPro.
DR GO; GO:1900364; P:negative regulation of mRNA polyadenylation; IEA:InterPro.
DR GO; GO:0043488; P:regulation of mRNA stability; IEA:InterPro.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 1.20.1390.10; PWI domain; 1.
DR InterPro; IPR040366; Nab2/ZC3H14.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR002483; PWI_dom.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR PANTHER; PTHR14738:SF32; RNA BINDING (RRM_RBD_RNP MOTIFS) FAMILY PROTEIN; 1.
DR PANTHER; PTHR14738; ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14; 1.
DR Pfam; PF01480; PWI; 1.
DR Pfam; PF00076; RRM_1; 1.
DR SMART; SM00360; RRM; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS50102; RRM; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}.
FT DOMAIN 506..583
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 108..207
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 222..251
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 621..664
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 116..135
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 136..151
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 164..182
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 184..205
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 222..247
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 630..664
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 664 AA; 73571 MW; D7C154A09078084A CRC64;
MGSADLVDDR TFNGDFSVEG AAKLKEMVMV KLKEFMGDYT DDTLVEYVIV LLRNGRRKEE
AKNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSHVEGTT IKSSLISSQN EDKALVPMDS
ESERGRSDKS NGARRGRQWR SQPTNVSEIP PLLSSEVHKI HNYEKKDHKH RHNKRSPSPQ
SQSHRKRSRT DDSRNEQREA KPDVSRRLLQ FAVRDALAIS RPVNSSTESS LKRLRSVVST
STQDSSDPDP ARKIRSVARV VNPMATVMKA VAEAAEDAKK PRSGRSVFDR ISHSTGFSET
LDQHMVHGEV SPKNEESRNF SEDQEAVQLQ YTQSLDNNGV YVEKMTTYDT GLQPAFSSDR
GRLGSSVNVS HPSTFLGNRI NNPNSLQHRL VDDSKRLTGS NYQNRLTEVD TKHKTASFSG
NVDTGKTVSL EEQMKVPDVG LQRYMDEGRL VSSEANNQLS TQKILSDTIR NGNIKPAANV
KEDSTTNKSV PGTLSTTRPL EDASSRTIFV ANVHFGATKD SLSRHFNKCG EVLKATIVTD
PATGQPSGSA YIEFTRKEAA ENALSLDGTS FMSRILKIVK GSNGQQQEAA SSMTWPRGGR
FARAPSYFRG GAVRGRSVVR GGARSMQWKR DSADTGNNNN VAPNNARSLT YVRTESKSDG
IAND
//
