ID D7L1D3_ARALL Unreviewed; 318 AA.
AC D7L1D3;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 03-MAY-2023, entry version 65.
DE SubName: Full=High mobility group family protein {ECO:0000313|EMBL:EFH61221.1};
GN ORFNames=ARALYDRAFT_478718 {ECO:0000313|EMBL:EFH61221.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
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DR EMBL; GL348715; EFH61221.1; -; Genomic_DNA.
DR RefSeq; XP_002884962.1; XM_002884916.1.
DR AlphaFoldDB; D7L1D3; -.
DR STRING; 81972.D7L1D3; -.
DR EnsemblPlants; fgenesh2_kg.3__1419__AT3G13350.1; fgenesh2_kg.3__1419__AT3G13350.1; fgenesh2_kg.3__1419__AT3G13350.1.
DR Gramene; fgenesh2_kg.3__1419__AT3G13350.1; fgenesh2_kg.3__1419__AT3G13350.1; fgenesh2_kg.3__1419__AT3G13350.1.
DR eggNOG; KOG0381; Eukaryota.
DR eggNOG; KOG2744; Eukaryota.
DR HOGENOM; CLU_035371_0_0_1; -.
DR OrthoDB; 5001776at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-UniRule.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd16872; ARID_HMGB9-like; 1.
DR CDD; cd22009; HMG-box_AtHMGB9-like; 1.
DR Gene3D; 1.10.150.60; ARID DNA-binding domain; 1.
DR Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR InterPro; IPR001606; ARID_dom.
DR InterPro; IPR036431; ARID_dom_sf.
DR InterPro; IPR045303; ARID_HMGB9-like.
DR InterPro; IPR009071; HMG_box_dom.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR PANTHER; PTHR46691:SF6; HIGH MOBILITY GROUP B PROTEIN 10-RELATED; 1.
DR PANTHER; PTHR46691; HIGH MOBILITY GROUP B PROTEIN 9; 1.
DR Pfam; PF01388; ARID; 1.
DR Pfam; PF00505; HMG_box; 1.
DR SMART; SM01014; ARID; 1.
DR SMART; SM00501; BRIGHT; 1.
DR SMART; SM00398; HMG; 1.
DR SUPFAM; SSF46774; ARID-like; 1.
DR SUPFAM; SSF47095; HMG-box; 1.
DR PROSITE; PS51011; ARID; 1.
DR PROSITE; PS50118; HMG_BOX_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Reference proteome {ECO:0000313|Proteomes:UP000008694}.
FT DOMAIN 39..130
FT /note="ARID"
FT /evidence="ECO:0000259|PROSITE:PS51011"
FT DOMAIN 237..304
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DNA_BIND 237..304
FT /note="HMG box"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT REGION 1..32
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 214..233
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..17
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 318 AA; 36137 MW; 45EC80E9907DB343 CRC64;
MSTDISPYSQ THVEPVNGYP SDNKRRDDSS APAKYDDLVR NSALFWDKLR AVLGLTSQTL
KVPTVGGNTL DLHRLFIEVT SRGGIERVVK DRKWKDVIGA FSFPTTITSA SFVLRKYYLK
FLFQLEHVYY LEKPVSSIQS TDEAMKSLAN ESPNPEEGID EPQVGYEVQG FIDGKFDNGY
LVTMKLGSQE LKGVIYHIPQ TPSQSQQTME TASATVPSSQ RRHRKKSKLA VVDNQKPKCH
RSGYNFFFAE QYARLKPEYH GQERSITKKI GHMWSNLTES EKQVYQDKGV KDVERYRIEM
LEYKSSHESG ATASTVAQ
//
