ID D7L4I5_ARALL Unreviewed; 559 AA.
AC D7L4I5;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 54.
DE SubName: Full=Zinc finger family protein {ECO:0000313|EMBL:EFH62554.1};
GN ORFNames=ARALYDRAFT_480900 {ECO:0000313|EMBL:EFH62554.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; GL348715; EFH62554.1; -; Genomic_DNA.
DR RefSeq; XP_002886295.1; XM_002886249.1.
DR AlphaFoldDB; D7L4I5; -.
DR STRING; 81972.D7L4I5; -.
DR EnsemblPlants; fgenesh2_kg.3__3601__AT2G20650.1; fgenesh2_kg.3__3601__AT2G20650.1; fgenesh2_kg.3__3601__AT2G20650.1.
DR Gramene; fgenesh2_kg.3__3601__AT2G20650.1; fgenesh2_kg.3__3601__AT2G20650.1; fgenesh2_kg.3__3601__AT2G20650.1.
DR eggNOG; KOG0828; Eukaryota.
DR HOGENOM; CLU_038877_0_0_1; -.
DR OrthoDB; 51730at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd23117; RING-H2_TUL1-like; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR22763; RING ZINC FINGER PROTEIN; 1.
DR PANTHER; PTHR22763:SF172; TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE FLY2; 1.
DR Pfam; PF13639; zf-RING_2; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00175}.
FT TRANSMEM 7..24
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 327..348
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 369..389
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 422..442
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 454..478
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 509..553
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
SQ SEQUENCE 559 AA; 63915 MW; 7ED5F1D638E75727 CRC64;
MNNLGNFGVW GLGFFSLSIW FAVLQQANGL RPIRETARSW GDEWRFGKKE KSGAGPFSAW
NITGTYRGSW NFLDTVNSSS KFPDFRKESG NSVIELVTSP TKITGVHYVQ GAVVFHDVFD
NEHNVGGAQI KVEGVYIWPF RQLRLVANSG KKGDSGLEDD YLLSNPYHLL GIFSSQVFQE
SPRDRILKQK TSPIYEMEKH CNIEIAAQIS QSASSENNGD KDRYHIEGLM ESPAVDDDGD
CFSPLSLNAT SINVEVYYNK AVNYTLMVTF VSFLQVLLLI RQMEHSNTQS GAAKVSIVMI
GQQAIMDSYL CLLHLTAGIL VESLFNAFAT AAFFKFVVFS IFEMRYLLSI WKATRPSTSG
EGWETMRREL SFLYSRFYGI LLGGILLMYE FHNYMRPILL LMYSFWFPQI VANVVRDSRK
PLHPYYILGM TVTRLAIPLY VFGCPKNFMR VEPSKAWCVS LCAFMGFQAA VLLLQHYFGS
RCFVPRKMLP EKYSYYRRLD HNVNRSRDCV ICMTTIDLRH RINDCMVTPC EHIFHSGCLQ
RWMDIKMECP TCRRPLPPA
//
