ID D7L7J3_ARALL Unreviewed; 597 AA.
AC D7L7J3;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 24-JAN-2024, entry version 59.
DE RecName: Full=RRM domain-containing protein {ECO:0000259|PROSITE:PS50102};
GN ORFNames=ARALYDRAFT_480534 {ECO:0000313|EMBL:EFH62304.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
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DR EMBL; GL348715; EFH62304.1; -; Genomic_DNA.
DR RefSeq; XP_002886045.1; XM_002885999.1.
DR AlphaFoldDB; D7L7J3; -.
DR STRING; 81972.D7L7J3; -.
DR EnsemblPlants; fgenesh2_kg.3__3235__AT2G19380.1; fgenesh2_kg.3__3235__AT2G19380.1; fgenesh2_kg.3__3235__AT2G19380.1.
DR Gramene; fgenesh2_kg.3__3235__AT2G19380.1; fgenesh2_kg.3__3235__AT2G19380.1; fgenesh2_kg.3__3235__AT2G19380.1.
DR eggNOG; KOG2186; Eukaryota.
DR HOGENOM; CLU_445767_0_0_1; -.
DR OrthoDB; 680501at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 3.30.1490.490; -; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 3.30.160.60; Classic Zinc Finger; 3.
DR InterPro; IPR039999; LYAR.
DR InterPro; IPR003604; Matrin/U1-like-C_Znf_C2H2.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR014898; Znf_C2H2_LYAR.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR InterPro; IPR013087; Znf_C2H2_type.
DR PANTHER; PTHR13100:SF10; CELL GROWTH-REGULATING NUCLEOLAR PROTEIN; 1.
DR PANTHER; PTHR13100; CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF08790; zf-LYAR; 1.
DR Pfam; PF12874; zf-met; 3.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00355; ZnF_C2H2; 4.
DR SMART; SM00451; ZnF_U1; 3.
DR SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 5.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS51804; ZF_C2HC_LYAR; 2.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU01145}.
FT DOMAIN 398..475
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 255..284
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 299..349
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 263..280
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 303..333
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 597 AA; 67835 MW; 864A2659CB7F06E1 CRC64;
MVWFQCEDCG ESLKKPRLSR HLRMCTATKF SCIDCGNMFG QDSVYYHNQC ITEAEKYGPK
GLSNGENSKQ KHDFDINTEL YKSPSWFCSL CNANMTCEQD YFAHVYGKKH QEKANEVADM
DYSKQQSEQP PVDKHNLKQQ PDFDIYVGLS NHYPWFCSLC NIMATSQQTL LSHANGKKHR
ANVEWFDAEQ QQRQVTQHST MDNSKQQIEV DINVGLSNCY PWFCSLCNVK ATCQQNLLSH
ANGRKHRENI ELFDATQQQQ LEKSSVDKKD TIENASDGNS EQKRVDLLVS SGVANGYPQA
GKKRKLETFD ETRNREVVQA EEAEGGGEKK QENKKKRKKE KKQTMSDSDF EYDKEDIKQL
LVSYSKEELV NLIYKTAEKG SRLISAILES ADRDIAQRNI FVRGFGWDTT HENLKAAFET
YGEIEDCSVV MDKDTGRGKG YGFVQFKTRK GAREALKRPE KRMYNRIVVC NLASKKPSGA
GKEQDMAEPV KIDLTQMANQ SEAVLPGPEL GHGHVLKKMH HQQQTIDMFG QNIPFYGHSH
QFPGFDPMYG ALSGLANYGM FGSGMMMNQG SMLQPPPNHL GMAGQYFGDG GHAWHQR
//
