ID D7L8J2_ARALL Unreviewed; 552 AA.
AC D7L8J2;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 64.
DE RecName: Full=RanBP2-type domain-containing protein {ECO:0000259|PROSITE:PS01358};
GN ORFNames=ARALYDRAFT_479356 {ECO:0000313|EMBL:EFH59397.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
CC -!- COFACTOR:
CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC Evidence={ECO:0000256|ARBA:ARBA00001947};
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DR EMBL; GL348715; EFH59397.1; -; Genomic_DNA.
DR RefSeq; XP_002883138.1; XM_002883092.1.
DR AlphaFoldDB; D7L8J2; -.
DR STRING; 81972.D7L8J2; -.
DR EnsemblPlants; fgenesh2_kg.3__2057__AT3G18520.1; fgenesh2_kg.3__2057__AT3G18520.1; fgenesh2_kg.3__2057__AT3G18520.1.
DR GeneID; 9319205; -.
DR Gramene; fgenesh2_kg.3__2057__AT3G18520.1; fgenesh2_kg.3__2057__AT3G18520.1; fgenesh2_kg.3__2057__AT3G18520.1.
DR KEGG; aly:9319205; -.
DR eggNOG; KOG1343; Eukaryota.
DR HOGENOM; CLU_007727_8_6_1; -.
DR OrthoDB; 124800at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0005730; C:nucleolus; IEA:EnsemblPlants.
DR GO; GO:0004407; F:histone deacetylase activity; IEA:UniProtKB-EC.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0009294; P:DNA-mediated transformation; IEA:EnsemblPlants.
DR GO; GO:0009640; P:photomorphogenesis; IEA:EnsemblPlants.
DR CDD; cd09992; HDAC_classII; 1.
DR Gene3D; 3.40.800.20; Histone deacetylase domain; 1.
DR InterPro; IPR000286; His_deacetylse.
DR InterPro; IPR023801; His_deacetylse_dom.
DR InterPro; IPR037138; His_deacetylse_dom_sf.
DR InterPro; IPR023696; Ureohydrolase_dom_sf.
DR InterPro; IPR001876; Znf_RanBP2.
DR PANTHER; PTHR10625:SF16; HISTONE DEACETYLASE 15; 1.
DR PANTHER; PTHR10625; HISTONE DEACETYLASE HDAC1-RELATED; 1.
DR Pfam; PF00850; Hist_deacetyl; 1.
DR PRINTS; PR01270; HDASUPER.
DR SUPFAM; SSF52768; Arginase/deacetylase; 1.
DR PROSITE; PS01358; ZF_RANBP2_1; 1.
PE 4: Predicted;
KW Chromatin regulator {ECO:0000256|ARBA:ARBA00022853};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW Repressor {ECO:0000256|ARBA:ARBA00022491};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 90..109
FT /note="RanBP2-type"
FT /evidence="ECO:0000259|PROSITE:PS01358"
SQ SEQUENCE 552 AA; 60384 MW; D90C06B526EA4FCB CRC64;
MVVETLERSC EGSKRRHVNG GDVAVPCSGD EFSNGDINAA PVVSAKRARV SREMTFQDIY
GADALLNDDD DEEDDCDWEP VQAPVEFVNW CCVNCTMSNP GDMVHCYICG EHKESGILRH
GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKPHP HPERPDRLRA
IAASLATAGV FPGRCLPINA REITKQELQM VHTSEHVDAV NTTSQLLYSY FTSDTYANEY
SARAARLAAG LCADLATEIF TGRVKNGFAL VRPPGHHAGI RHAMGFCLHN NAAVAALVAQ
AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GHFYPGTGAA DEVGTNGGEG
YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS AGFDAARGDP LGCCDVTPAG
YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS SSATAVIKVL LGEIPENNLP IAATPSREGL
QTVLDVMNIQ MKFWPSLAIS YSKLLSEWEA RLIENKKNQM KRKLVRVPTW WKWGRKKLLY
KFLSGRMISR SK
//
