ID D7LR16_ARALL Unreviewed; 532 AA.
AC D7LR16;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 63.
DE RecName: Full=Cyclin-like domain-containing protein {ECO:0000259|SMART:SM00385};
GN ORFNames=ARALYDRAFT_346626 {ECO:0000313|EMBL:EFH51326.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
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DR EMBL; GL348717; EFH51326.1; -; Genomic_DNA.
DR RefSeq; XP_002875067.1; XM_002875021.1.
DR AlphaFoldDB; D7LR16; -.
DR STRING; 81972.D7LR16; -.
DR EnsemblPlants; fgenesh1_pg.C_scaffold_5000018; fgenesh1_pg.C_scaffold_5000018; fgenesh1_pg.C_scaffold_5000018.
DR GeneID; 9312809; -.
DR Gramene; fgenesh1_pg.C_scaffold_5000018; fgenesh1_pg.C_scaffold_5000018; fgenesh1_pg.C_scaffold_5000018.
DR KEGG; aly:9312809; -.
DR eggNOG; KOG1598; Eukaryota.
DR HOGENOM; CLU_010293_1_0_1; -.
DR OrthoDB; 5483352at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0017025; F:TBP-class protein binding; IEA:InterPro.
DR GO; GO:0070897; P:transcription preinitiation complex assembly; IEA:InterPro.
DR CDD; cd20553; CYCLIN_TFIIIB90_rpt1; 1.
DR CDD; cd20554; CYCLIN_TFIIIB90_rpt2; 1.
DR Gene3D; 1.10.472.10; Cyclin-like; 2.
DR Gene3D; 1.20.5.650; Single helix bin; 1.
DR InterPro; IPR011665; BRF1_TBP-bd_dom.
DR InterPro; IPR013763; Cyclin-like_dom.
DR InterPro; IPR036915; Cyclin-like_sf.
DR InterPro; IPR000812; TFIIB.
DR InterPro; IPR013150; TFIIB_cyclin.
DR PANTHER; PTHR11618:SF64; CYCLIN_BRF1-LIKE TBP-BINDING PROTEIN; 1.
DR PANTHER; PTHR11618; TRANSCRIPTION INITIATION FACTOR IIB-RELATED; 1.
DR Pfam; PF07741; BRF1; 1.
DR Pfam; PF00382; TFIIB; 2.
DR PRINTS; PR00685; TIFACTORIIB.
DR SMART; SM00385; CYCLIN; 2.
DR SUPFAM; SSF47954; Cyclin-like; 2.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 76..160
FT /note="Cyclin-like"
FT /evidence="ECO:0000259|SMART:SM00385"
FT DOMAIN 182..268
FT /note="Cyclin-like"
FT /evidence="ECO:0000259|SMART:SM00385"
FT REGION 348..385
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 424..444
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 475..532
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 348..367
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 368..383
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 475..498
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 499..532
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 532 AA; 59925 MW; 22A4C2D987E894B7 CRC64;
MVWCNHCAKN VPGIRPFDGG LACDLCGRIL ENFNFSDEVT FVKNAAGQSQ ASGNIVTSVQ
SGIPSSRVRR FRIARDEFRN LKDALGIGDE RDDVIDTAAR FFEMATEQNF TKGRRTELVQ
SSCLYLTCRE KKIPFLLIDF SSYLRVSVYE LGSVYLQLCE MFYLVQNGNY EELVDPSIFI
PQFMNNLLKG AHNIAKNVLD KVLGTATNII SSMKRDWMQT GRKPSGICGA AIYIAALSHG
IMCSRADIAK IVHMCEATIT KRLDEFANTE AASLTVDELD KSENILREKP FSPRPNSDEG
VVNCKHKDLK RFGFGLCKSC HDAFMKISGG VVGGSDPPAF QRAEKERMEK AAREENEGAI
EKSEGETDWD AEAPDESGNL SDLDGDAEVD GCFLNEDEKL MTKISWELDN RDYLEVNLEA
VAKSRKEKRQ KRAEEAKNAP PPATAMEAVR RIVKRKRLSG INCDFLDELL DNVPAEKSQK
KPRTETVTEK KKEEHEIVED EEAAYEMNTD EKFYEDEVEE EEEEDGYDFG LY
//
