GenomeNet

Database: UniProt
Entry: D7LRP7_ARALL
LinkDB: D7LRP7_ARALL
Original site: D7LRP7_ARALL 
ID   D7LRP7_ARALL            Unreviewed;       315 AA.
AC   D7LRP7;
DT   10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT   10-AUG-2010, sequence version 1.
DT   31-JUL-2019, entry version 58.
DE   RecName: Full=Homeobox domain-containing protein {ECO:0000259|PROSITE:PS50071};
GN   ORFNames=ARALYDRAFT_486512 {ECO:0000313|EMBL:EFH54592.1};
OS   Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC   Arabidopsis.
OX   NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN   [1] {ECO:0000313|Proteomes:UP000008694}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX   PubMed=21478890; DOI=10.1038/ng.807;
RA   Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA   Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA   Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A.,
RA   Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E.,
RA   Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X.,
RA   Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT   "The Arabidopsis lyrata genome sequence and the basis of rapid genome
RT   size change.";
RL   Nat. Genet. 43:476-481(2011).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE-
CC       ProRule:PRU00108, ECO:0000256|RuleBase:RU000682}.
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DR   EMBL; GL348717; EFH54592.1; -; Genomic_DNA.
DR   RefSeq; XP_002878333.1; XM_002878287.1.
DR   STRING; 59689.fgenesh2_kg.5__2504__AT3G60390.1; -.
DR   EnsemblPlants; fgenesh2_kg.5__2504__AT3G60390.1; fgenesh2_kg.5__2504__AT3G60390.1; fgenesh2_kg.5__2504__AT3G60390.1.
DR   Gramene; fgenesh2_kg.5__2504__AT3G60390.1; fgenesh2_kg.5__2504__AT3G60390.1; fgenesh2_kg.5__2504__AT3G60390.1.
DR   KEGG; aly:ARALYDRAFT_486512; -.
DR   KO; K09338; -.
DR   Proteomes; UP000008694; Unassembled WGS sequence.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   CDD; cd00086; homeodomain; 1.
DR   InterPro; IPR006712; HD-ZIP_N.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR017970; Homeobox_CS.
DR   InterPro; IPR001356; Homeobox_dom.
DR   InterPro; IPR003106; Leu_zip_homeo.
DR   Pfam; PF02183; HALZ; 1.
DR   Pfam; PF04618; HD-ZIP_N; 1.
DR   Pfam; PF00046; Homeodomain; 1.
DR   SMART; SM00340; HALZ; 1.
DR   SMART; SM00389; HOX; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   PROSITE; PS00027; HOMEOBOX_1; 1.
DR   PROSITE; PS50071; HOMEOBOX_2; 1.
PE   4: Predicted;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000008694};
KW   DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00108,
KW   ECO:0000256|RuleBase:RU000682};
KW   Homeobox {ECO:0000256|PROSITE-ProRule:PRU00108,
KW   ECO:0000256|RuleBase:RU000682};
KW   Nucleus {ECO:0000256|PROSITE-ProRule:PRU00108,
KW   ECO:0000256|RuleBase:RU000682};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008694}.
FT   DOMAIN      157    217       Homeobox. {ECO:0000259|PROSITE:PS50071}.
FT   DNA_BIND    159    218       Homeobox. {ECO:0000256|PROSITE-ProRule:
FT                                PRU00108}.
FT   REGION       92    115       Disordered. {ECO:0000256|SAM:MobiDB-
FT                                lite}.
FT   REGION      139    162       Disordered. {ECO:0000256|SAM:MobiDB-
FT                                lite}.
FT   REGION      280    315       Disordered. {ECO:0000256|SAM:MobiDB-
FT                                lite}.
FT   COILED      223    250       {ECO:0000256|SAM:Coils}.
FT   COMPBIAS     97    113       Polar. {ECO:0000256|SAM:MobiDB-lite}.
FT   COMPBIAS    280    297       Polar. {ECO:0000256|SAM:MobiDB-lite}.
SQ   SEQUENCE   315 AA;  34689 MW;  4BA852BCD470D226 CRC64;
     MGERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYSTSSH MHMQQSNYSH PQKIQNTWIN
     MFHSSERNTD MRSFLRGIDV NRAPSTVVVD VEDDGAGVSS PNSTVSSVMS GKRSERELMT
     AAATAGGGGR VEDNEMERAS CSLGGGSDDE DGSGNGDDGS RKKLRLSKEQ ALVLEETFKE
     HSTLNPKQKM ALAKQLNLRT RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL
     QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMT SSSPMGPMSP
     WAAIPLRQRP AAGSH
//
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