ID D7LY59_ARALL Unreviewed; 942 AA.
AC D7LY59;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 24-JAN-2024, entry version 71.
DE SubName: Full=Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:EFH47374.1};
GN ORFNames=ARALYDRAFT_487264 {ECO:0000313|EMBL:EFH47374.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC {ECO:0000256|ARBA:ARBA00007626}.
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DR EMBL; GL348718; EFH47374.1; -; Genomic_DNA.
DR RefSeq; XP_002871115.1; XM_002871069.1.
DR AlphaFoldDB; D7LY59; -.
DR STRING; 81972.D7LY59; -.
DR EnsemblPlants; fgenesh2_kg.6__398__AT5G04810.1; fgenesh2_kg.6__398__AT5G04810.1; fgenesh2_kg.6__398__AT5G04810.1.
DR Gramene; fgenesh2_kg.6__398__AT5G04810.1; fgenesh2_kg.6__398__AT5G04810.1; fgenesh2_kg.6__398__AT5G04810.1.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_011727_0_0_1; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0003729; F:mRNA binding; IEA:EnsemblPlants.
DR GO; GO:0009880; P:embryonic pattern specification; IEA:EnsemblPlants.
DR GO; GO:0048366; P:leaf development; IEA:EnsemblPlants.
DR GO; GO:0008380; P:RNA splicing; IEA:EnsemblPlants.
DR CDD; cd00590; RRM_SF; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 6.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 13.
DR PANTHER; PTHR47939; MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE; 1.
DR PANTHER; PTHR47939:SF1; OS04G0684500 PROTEIN; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 5.
DR Pfam; PF13812; PPR_3; 1.
DR Pfam; PF00076; RRM_1; 1.
DR SMART; SM00360; RRM; 1.
DR SUPFAM; SSF81901; HCP-like; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS51375; PPR; 13.
DR PROSITE; PS50102; RRM; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}.
FT DOMAIN 166..244
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REPEAT 309..343
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 344..378
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 414..448
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 484..518
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 519..553
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 554..588
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 589..623
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 624..658
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 659..693
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 694..728
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 729..763
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 764..798
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 799..833
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REGION 28..89
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 119..163
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 262..281
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 922..942
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 34..51
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 138..161
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 923..942
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 942 AA; 105649 MW; BFA9EF8C5C5A5FD1 CRC64;
MDNGGSVLSL SAPHFPYSAT ILRRHSPMAS ISFSLKPPPQ PPQPPPEPPE SPPDLRRPEK
SLGSSSSSSS PSPIPSPKTP LKINPLKDLT NRSSVSPLVQ SEVSSKVSSF GSSLASKLRL
SSKLSPPPPP PPPLVEETQF RDDMRNDTKP PEEETPKPQP EFRQEGKIFV GNLPTWIKKP
EFEEFFRQFG PIENVILIKG HHEVEKNAGF GFIIYAAEKS AMKAVEFDGV EFHGRILTVK
LDDGKRLKTK AEQRVRWVQE GEEDAKMSNK SSWHQEREGS RKSLQRILDT NGDNWQAVIS
AFEKINKPSR TEFGLMVKFY GRRGDMHRAR ETFERMRARG ITPTSRIYTS LIHAYAVGRD
MEEALSCVRK MKEEGIEMSL VTYSVIVGGF SKAGNAEAAD HWFDEAKRIH KTLNASIYGK
IIYAHCQTCN MERAEALVRE MEEEGIDAPI AIYHTMMDGY TMVADEKKGL IVFKRLKECG
FTPTVVTYGC LINLYTKVGK ISKALEVSRV MKEEGVKHNL KTYSMMINGF VKLKDWANAF
AVFEDMVKEG MKPDVILYNN IIAAFCGMGN MDRAIQTVKE MQKLRHRPTT RTFMPIINGF
AKSGDMRRSL EVFDMMRRCG CVPTVHTFNA LINGLVEKRQ MEKAVEILDE MTLAGVSANE
HTYTKIMQGY ASVGDTGKAF EYFTRLQNEG LEVDIFTYEA LLKACCKSGR MQSALAVTKE
MSARNIPRNS FVYNILIDGW ARRGDVWEAA DLIQQMKKEG VKPDIHTYTS FISACSKAGD
MNRATQTIEE MEALGVKPNI KTYTTLIKGW ARASLPEKAL SCYEEMKAVG LKPDKAVYHC
LLTSLLSRAS IAEAYIYSGV MTICKEMVEA GLIVDMGTAV HWSRCLCKIE GSGGELTETL
QKTFPPDWSS HHHHHGFLDQ VSDVDSDEDD VDGEDDDDDA YK
//
