ID D7M3D7_ARALL Unreviewed; 776 AA.
AC D7M3D7;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 63.
DE SubName: Full=Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:EFH49074.1};
GN ORFNames=ARALYDRAFT_911927 {ECO:0000313|EMBL:EFH49074.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; GL348718; EFH49074.1; -; Genomic_DNA.
DR RefSeq; XP_002872815.1; XM_002872769.1.
DR AlphaFoldDB; D7M3D7; -.
DR STRING; 81972.D7M3D7; -.
DR EnsemblPlants; scaffold_603984.1; scaffold_603984.1; scaffold_603984.1.
DR GeneID; 9308884; -.
DR Gramene; scaffold_603984.1; scaffold_603984.1; scaffold_603984.1.
DR KEGG; aly:9308884; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_6_1; -.
DR OrthoDB; 464681at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0140547; P:acquisition of seed longevity; IEA:EnsemblPlants.
DR GO; GO:0010214; P:seed coat development; IEA:EnsemblPlants.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 7.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 13.
DR PANTHER; PTHR47924:SF204; DYW_DEAMINASE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR47924; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 10.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 1.
DR SUPFAM; SSF48452; TPR-like; 2.
DR PROSITE; PS51375; PPR; 7.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 58..88
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 89..123
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 151..185
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 244..274
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 275..309
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 337..371
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 469..503
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 684..776
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
FT REGION 27..56
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 27..53
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 776 AA; 88352 MW; C159DAB440E0405F CRC64;
MQIYKFGALS RRHTSLNGLK RRYNNANSAS NFHSSKSSTQ TQIQKSQTKP LPKSGDSDIK
EWNVAISSYM RTGRCSEALR VFKRMPRWSS VSYNAMISGY LRNGEFELAR MLFDEMPERD
LVSWNVMIKG YVRNRNLGKA RELFERMPER DVCSWNTILS GYAQNGCVDD ARRVFDRMPE
KNDVSWNALL SAYVQNSKLE EACVLFGSRE NWALVSWNCL LGGFVKKKKI VEARQFFDSM
KVRDVVSWNT IITGYAQNGE IDEARQLFDE SPVHDVFTWT AMVSGYIQNR MVEEARELFD
RMPERNEVSW NAMLAGYVQG ERVEMAKELF DVMPCRNVST WNTMITGYAQ CGKISEAKNL
FDKMPKRDPV SWAAMIAGYS QSGHSYEALR LFVLMEREGG RLNRSSFSSA LSTCADVVAL
ELGKQLHGRL VKGGYETGCF VGNALLLMYC KCGSIEEAND LFKEMAGKDI VSWNTMIAGY
SRHGFGEEAL RFFESMKREG LKPDDATMVA VLSACSHTGL VDKGRQYFHT MTQDYGVRPN
SQHYACMVDL LGRAGLLEEA HNLMKNMPFE PDAAIWGTLL GASRVHGNTE LAETAADKIF
AMEPENSGMY VLLSNLYASS GRWGDVGKLR VRMRDKGVKK VPGYSWIEIQ NKTHTFSVGD
EFHPEKDEIF AFLEDLDLRM KKAGYVSKTS VVLHDVEEEE KERMVRYHSE RLAVAYGIMR
VSSGRPIRVI KNLRVCEDCH NAIKYMAKVT GRLIILRDNN RFHHFKDGSC SCGDYW
//
