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Database: UniProt
Entry: D7M8Z5_ARALL
LinkDB: D7M8Z5_ARALL
Original site: D7M8Z5_ARALL 
ID   D7M8Z5_ARALL            Unreviewed;       933 AA.
AC   D7M8Z5;
DT   10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT   10-AUG-2010, sequence version 1.
DT   24-JAN-2024, entry version 68.
DE   RecName: Full=AAA+ ATPase domain-containing protein {ECO:0000259|SMART:SM00382};
GN   ORFNames=ARALYDRAFT_492469 {ECO:0000313|EMBL:EFH46012.1};
OS   Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN   [1] {ECO:0000313|Proteomes:UP000008694}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX   PubMed=21478890; DOI=10.1038/ng.807;
RA   Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA   Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA   Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA   Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA   Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA   Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT   "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT   change.";
RL   Nat. Genet. 43:476-481(2011).
CC   -!- SIMILARITY: In the C-terminal section; belongs to the peptidase M41
CC       family. {ECO:0000256|ARBA:ARBA00010044}.
CC   -!- SIMILARITY: In the N-terminal section; belongs to the AAA ATPase
CC       family. {ECO:0000256|ARBA:ARBA00010550}.
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DR   EMBL; GL348719; EFH46012.1; -; Genomic_DNA.
DR   RefSeq; XP_002869753.1; XM_002869707.1.
DR   AlphaFoldDB; D7M8Z5; -.
DR   STRING; 81972.D7M8Z5; -.
DR   EnsemblPlants; fgenesh2_kg.7__1902__AT4G23940.1; fgenesh2_kg.7__1902__AT4G23940.1; fgenesh2_kg.7__1902__AT4G23940.1.
DR   GeneID; 9305824; -.
DR   Gramene; fgenesh2_kg.7__1902__AT4G23940.1; fgenesh2_kg.7__1902__AT4G23940.1; fgenesh2_kg.7__1902__AT4G23940.1.
DR   KEGG; aly:9305824; -.
DR   eggNOG; KOG0731; Eukaryota.
DR   HOGENOM; CLU_000688_24_1_1; -.
DR   OrthoDB; 295785at2759; -.
DR   Proteomes; UP000008694; Unassembled WGS sequence.
DR   GO; GO:0009706; C:chloroplast inner membrane; IEA:EnsemblPlants.
DR   GO; GO:0062091; C:Ycf2/FtsHi complex; IEA:EnsemblPlants.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR   GO; GO:0004176; F:ATP-dependent peptidase activity; IEA:InterPro.
DR   GO; GO:0016464; F:chloroplast protein-transporting ATPase activity; IEA:EnsemblPlants.
DR   GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro.
DR   GO; GO:0010020; P:chloroplast fission; IEA:EnsemblPlants.
DR   GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants.
DR   GO; GO:0045037; P:protein import into chloroplast stroma; IEA:EnsemblPlants.
DR   GO; GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
DR   CDD; cd19501; RecA-like_FtsH; 1.
DR   Gene3D; 1.10.8.60; -; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   Gene3D; 1.20.58.760; Peptidase M41; 1.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR041569; AAA_lid_3.
DR   InterPro; IPR003959; ATPase_AAA_core.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR000642; Peptidase_M41.
DR   InterPro; IPR037219; Peptidase_M41-like.
DR   PANTHER; PTHR23076:SF111; INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 1, CHLOROPLASTIC-RELATED; 1.
DR   PANTHER; PTHR23076; METALLOPROTEASE M41 FTSH; 1.
DR   Pfam; PF00004; AAA; 1.
DR   Pfam; PF17862; AAA_lid_3; 1.
DR   Pfam; PF01434; Peptidase_M41; 1.
DR   SMART; SM00382; AAA; 1.
DR   SUPFAM; SSF140990; FtsH protease domain-like; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
PE   3: Inferred from homology;
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW   Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW   Protease {ECO:0000256|ARBA:ARBA00022670};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW   Transit peptide {ECO:0000256|ARBA:ARBA00022946};
KW   Transmembrane {ECO:0000256|ARBA:ARBA00022692, ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|ARBA:ARBA00022989,
KW   ECO:0000256|SAM:Phobius}.
FT   TRANSMEM        276..309
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        362..381
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   DOMAIN          449..596
FT                   /note="AAA+ ATPase"
FT                   /evidence="ECO:0000259|SMART:SM00382"
SQ   SEQUENCE   933 AA;  104361 MW;  F752F7F82D60C14B CRC64;
     MASVDTIFSL GTRFPETPRK SIWSVAAKTR WRAPILRRSF TVLCELKSRS NETNNPPPAD
     DFVTRVLKEN PSQLEPRYRV GDKLYNLKER EDLSKGANAA TGAFEFIKRK FDSKTKTETE
     KSQESVYLSD ILREYKGKLY VPEQVFAPEL SEEEEFEKTV KDLPNLSLED FRKAMENDKV
     KLLTSKEVSG VPYTSGYRDF IVDLKEIPGV KSLQRTKWSM KLEVGEAQAL LKEYTGPQYE
     IERHMTSWVG KVTDFPNPVA SSISSRVMVE LGMVTAVIAA AAVVVGGFLA SAVFAVTSFA
     FVTTVYVVWP IAKPFLKLFV GIFFGVLEKS WDYLVDFLGD GGIFSRISDF YTFGGVSSSL
     EMLKPILLVV MTMVLLVRFT LSRRPKNFRK WDLWQGIAFS QSKAEARVDG STGVKFADVA
     GIDEAVDELQ ELVKYLKNPD LFDKMGIKPP HGVLLEGPPG CGKTLVAKAI AGEAGVPFYQ
     MAGSEFVEVL VGVGSARIRD LFKRAKVNKP SVIFIDEIDA LATRRQGIFK ENSDQLYNAA
     TQERETTLNQ LLIELDGFDT GKGVIFLGAT NRRDLLDPAL LRPGRFDRKI RVRPPNAKGR
     LDILKIHASK VKMSDSVDLS SYASNLPGWS GAKLAQLVQE AALVAVRKTH SSILQSDMDD
     AVDRLTVGPT RIGLELGHQG QCRRATTEVG VAITSHLLLR YENAKIERCD RVSIIPRGQT
     LSQVVFHRLD DESYMFGRLP QLLHRLQVFL GGRAAEEVIY GSDTSKASVD YLSDASWLAR
     KILTIWNLEN PMVIHGEPPP WRKRAQFVGP RLDFEGSLYD DYDLVEPPIN FNMDDEVAQR
     SEELISQMYN KTVSLLTQNQ TALLKTVKVL LNQKEISGEA IDFILDQYPP QTPLNSLLQE
     QNPGSLPFVP EHLQRESGDF VLVNHSTDVN AQA
//
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