ID D7M8Z5_ARALL Unreviewed; 933 AA.
AC D7M8Z5;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 24-JAN-2024, entry version 68.
DE RecName: Full=AAA+ ATPase domain-containing protein {ECO:0000259|SMART:SM00382};
GN ORFNames=ARALYDRAFT_492469 {ECO:0000313|EMBL:EFH46012.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
CC -!- SIMILARITY: In the C-terminal section; belongs to the peptidase M41
CC family. {ECO:0000256|ARBA:ARBA00010044}.
CC -!- SIMILARITY: In the N-terminal section; belongs to the AAA ATPase
CC family. {ECO:0000256|ARBA:ARBA00010550}.
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DR EMBL; GL348719; EFH46012.1; -; Genomic_DNA.
DR RefSeq; XP_002869753.1; XM_002869707.1.
DR AlphaFoldDB; D7M8Z5; -.
DR STRING; 81972.D7M8Z5; -.
DR EnsemblPlants; fgenesh2_kg.7__1902__AT4G23940.1; fgenesh2_kg.7__1902__AT4G23940.1; fgenesh2_kg.7__1902__AT4G23940.1.
DR GeneID; 9305824; -.
DR Gramene; fgenesh2_kg.7__1902__AT4G23940.1; fgenesh2_kg.7__1902__AT4G23940.1; fgenesh2_kg.7__1902__AT4G23940.1.
DR KEGG; aly:9305824; -.
DR eggNOG; KOG0731; Eukaryota.
DR HOGENOM; CLU_000688_24_1_1; -.
DR OrthoDB; 295785at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0009706; C:chloroplast inner membrane; IEA:EnsemblPlants.
DR GO; GO:0062091; C:Ycf2/FtsHi complex; IEA:EnsemblPlants.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0004176; F:ATP-dependent peptidase activity; IEA:InterPro.
DR GO; GO:0016464; F:chloroplast protein-transporting ATPase activity; IEA:EnsemblPlants.
DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro.
DR GO; GO:0010020; P:chloroplast fission; IEA:EnsemblPlants.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants.
DR GO; GO:0045037; P:protein import into chloroplast stroma; IEA:EnsemblPlants.
DR GO; GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
DR CDD; cd19501; RecA-like_FtsH; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 1.20.58.760; Peptidase M41; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR041569; AAA_lid_3.
DR InterPro; IPR003959; ATPase_AAA_core.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000642; Peptidase_M41.
DR InterPro; IPR037219; Peptidase_M41-like.
DR PANTHER; PTHR23076:SF111; INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 1, CHLOROPLASTIC-RELATED; 1.
DR PANTHER; PTHR23076; METALLOPROTEASE M41 FTSH; 1.
DR Pfam; PF00004; AAA; 1.
DR Pfam; PF17862; AAA_lid_3; 1.
DR Pfam; PF01434; Peptidase_M41; 1.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF140990; FtsH protease domain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
PE 3: Inferred from homology;
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW Protease {ECO:0000256|ARBA:ARBA00022670};
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946};
KW Transmembrane {ECO:0000256|ARBA:ARBA00022692, ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|ARBA:ARBA00022989,
KW ECO:0000256|SAM:Phobius}.
FT TRANSMEM 276..309
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 362..381
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 449..596
FT /note="AAA+ ATPase"
FT /evidence="ECO:0000259|SMART:SM00382"
SQ SEQUENCE 933 AA; 104361 MW; F752F7F82D60C14B CRC64;
MASVDTIFSL GTRFPETPRK SIWSVAAKTR WRAPILRRSF TVLCELKSRS NETNNPPPAD
DFVTRVLKEN PSQLEPRYRV GDKLYNLKER EDLSKGANAA TGAFEFIKRK FDSKTKTETE
KSQESVYLSD ILREYKGKLY VPEQVFAPEL SEEEEFEKTV KDLPNLSLED FRKAMENDKV
KLLTSKEVSG VPYTSGYRDF IVDLKEIPGV KSLQRTKWSM KLEVGEAQAL LKEYTGPQYE
IERHMTSWVG KVTDFPNPVA SSISSRVMVE LGMVTAVIAA AAVVVGGFLA SAVFAVTSFA
FVTTVYVVWP IAKPFLKLFV GIFFGVLEKS WDYLVDFLGD GGIFSRISDF YTFGGVSSSL
EMLKPILLVV MTMVLLVRFT LSRRPKNFRK WDLWQGIAFS QSKAEARVDG STGVKFADVA
GIDEAVDELQ ELVKYLKNPD LFDKMGIKPP HGVLLEGPPG CGKTLVAKAI AGEAGVPFYQ
MAGSEFVEVL VGVGSARIRD LFKRAKVNKP SVIFIDEIDA LATRRQGIFK ENSDQLYNAA
TQERETTLNQ LLIELDGFDT GKGVIFLGAT NRRDLLDPAL LRPGRFDRKI RVRPPNAKGR
LDILKIHASK VKMSDSVDLS SYASNLPGWS GAKLAQLVQE AALVAVRKTH SSILQSDMDD
AVDRLTVGPT RIGLELGHQG QCRRATTEVG VAITSHLLLR YENAKIERCD RVSIIPRGQT
LSQVVFHRLD DESYMFGRLP QLLHRLQVFL GGRAAEEVIY GSDTSKASVD YLSDASWLAR
KILTIWNLEN PMVIHGEPPP WRKRAQFVGP RLDFEGSLYD DYDLVEPPIN FNMDDEVAQR
SEELISQMYN KTVSLLTQNQ TALLKTVKVL LNQKEISGEA IDFILDQYPP QTPLNSLLQE
QNPGSLPFVP EHLQRESGDF VLVNHSTDVN AQA
//