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Database: UniProt
Entry: D7MB91_ARALL
LinkDB: D7MB91_ARALL
Original site: D7MB91_ARALL 
ID   D7MB91_ARALL            Unreviewed;      1872 AA.
AC   D7MB91;
DT   10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT   10-AUG-2010, sequence version 1.
DT   24-JAN-2024, entry version 73.
DE   SubName: Full=Transducin family protein {ECO:0000313|EMBL:EFH45601.1};
GN   ORFNames=ARALYDRAFT_491627 {ECO:0000313|EMBL:EFH45601.1};
OS   Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN   [1] {ECO:0000313|Proteomes:UP000008694}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX   PubMed=21478890; DOI=10.1038/ng.807;
RA   Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA   Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA   Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA   Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA   Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA   Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT   "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT   change.";
RL   Nat. Genet. 43:476-481(2011).
CC   -!- PATHWAY: Protein modification; protein ubiquitination.
CC       {ECO:0000256|ARBA:ARBA00004906}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC   -!- SIMILARITY: Belongs to the VPRBP/DCAF1 family.
CC       {ECO:0000256|ARBA:ARBA00008845}.
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DR   EMBL; GL348719; EFH45601.1; -; Genomic_DNA.
DR   RefSeq; XP_002869342.1; XM_002869296.1.
DR   STRING; 81972.D7MB91; -.
DR   EnsemblPlants; fgenesh2_kg.7__1060__AT4G31160.1; fgenesh2_kg.7__1060__AT4G31160.1; fgenesh2_kg.7__1060__AT4G31160.1.
DR   Gramene; fgenesh2_kg.7__1060__AT4G31160.1; fgenesh2_kg.7__1060__AT4G31160.1; fgenesh2_kg.7__1060__AT4G31160.1.
DR   eggNOG; KOG1832; Eukaryota.
DR   HOGENOM; CLU_237244_0_0_1; -.
DR   UniPathway; UPA00143; -.
DR   Proteomes; UP000008694; Unassembled WGS sequence.
DR   GO; GO:0080008; C:Cul4-RING E3 ubiquitin ligase complex; IEA:EnsemblPlants.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants.
DR   GO; GO:0009908; P:flower development; IEA:EnsemblPlants.
DR   GO; GO:0048366; P:leaf development; IEA:EnsemblPlants.
DR   GO; GO:0016567; P:protein ubiquitination; IEA:UniProtKB-UniPathway.
DR   Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR   InterPro; IPR006594; LisH.
DR   InterPro; IPR033270; VPRBP/DCAF1.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   InterPro; IPR036322; WD40_repeat_dom_sf.
DR   InterPro; IPR001680; WD40_rpt.
DR   PANTHER; PTHR13129:SF4; DDB1- AND CUL4-ASSOCIATED FACTOR 1; 1.
DR   PANTHER; PTHR13129; VPRBP PROTEIN-RELATED; 1.
DR   Pfam; PF08513; LisH; 1.
DR   SMART; SM00667; LisH; 1.
DR   SMART; SM00320; WD40; 3.
DR   SUPFAM; SSF50978; WD40 repeat-like; 1.
DR   PROSITE; PS50896; LISH; 1.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW   Ubl conjugation pathway {ECO:0000256|ARBA:ARBA00022786}.
FT   REGION          1..53
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          316..372
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          888..930
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1163..1246
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1297..1362
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1751..1872
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        25..40
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        318..346
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        890..927
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1199..1246
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1303..1362
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1760..1785
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1792..1820
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1830..1858
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1872 AA;  203816 MW;  0AE50F09D99368F1 CRC64;
     MDGQEHAEVP NQMVEDEQSV VAAEAITELA NSNNEANPEE GGQQEGEEES VEDELIAKAQ
     KLMDDITSVA NNPNPNFLHA LSHLLESQES LFLEENGHFS NARGSHSSGK LCTLIRENDE
     FFELISSTFL SENSYSTAVK AASARLLMNC SLTWMYPHVF DDAVTENFKN WVMEEAVKFP
     GEDSGRKEAS DSEMLKTYST GLLALSLASR GQIVEDVLTS GLSAKLMHYL RVRVIGEPST
     SRRDALHTTE TKHVSLKTKE EGRSRVRKVV DTVEGDHVFE TDSGREMGQT DVQSDGEFEI
     DGREIFNVSG VVDCKIKPGD DNSGRDDPSR HRLNRSKSRG RGRVNEGATD TEVLLASPRS
     GRPVVRDKDL SKFSDGRNGE DVTICLGKMK SGIMEIERED DDECFQGCII GTKNIIDLVK
     RAVGAAETEA RAAHAPDDAA KAAGDAAAEL VKTAALEEFK SSGSEEAAVS AATRAAITVI
     DAAEVSRNPT CVTSDQTTDV SEVSLPDIES LAQLQEKYCI QCLEILGEYV EVLGPVLHEK
     GVDVCIMLLE RTSQCDDSST VSPLLPDVMK LICALAAHRK FAAMFVDRGG IQKLLAVPRV
     SETFYGLSSC LYTIGSLQGI MERVCALPSD LIHQVVKLAI ELLDCSQDQA RKNSALFFAA
     AFVFRAILDA FDAHDSLQKL LAILKDAASV RTGANSDRSA PEVMTSSEKQ MAFHTCFALR
     QYFRAHLLLL VDSIRPSRSS RGGVRNVPNI RAAYKPLDIS NEAVDAIFHQ LQKDRKLGPT
     FVRTQWPAVN NFLASSGHVT MLELCQTPPV DRYLHDLLQY AFGVLHIVTS IPDGRKAIAH
     ATLSNNRAGI AVILDAANIS NSIVDPEIIQ PALNVLINLV CPPPSLSNKP PLAQNHQPVP
     GQATTRPSTD VAVGTQSTGN APQTPVAPAS SGLVGDRRIF LGAGTGSAGL AAKLEQVYRQ
     AREAVRGNDG IKILLKLLQP RIYVNPPATP DCLRALACRV LLGLARDDTI AQILTKLEIV
     TNSGHATTLT ASDAATPTLR RIERAAIAAA TPITYDSKEL LLLIHEHLQA SGLGETASAL
     LKEAQLTPLP SLASPSSIAY SSTQEMSTPL AQEQWPSGRA NSGFFTSKPK VCAHDEDPNS
     RCNAAISAKK KHLASSTLEI PTPVAQQQWP SGRANSGFFP SIPRINALDE DPSSRGNAAP
     SAKKKQLTFS PSFSLQSRKQ SFSHDAQPQS TQRINSSSNS DPAWADTSET AAELVLKNDL
     DADAQFKTPI SFPRKRKLSE LRDPELSVPG KRINLGELGL RSPACPTTSS LRRNSTIAES
     SGLQTPASAL DANQSGSSRL GQMTPASQLR LPSDPQPSNP ERLSLDSLVV QYLKHQHRQC
     LAPITTLPPV SLLHPHVCPE PKRLLEAPLN ITGRLGTREL QSFYSGVHGN RRDRQFVFSR
     FKSWRSFRDE TALFTCIALL GGTNHLAVGS HAGEIKIFEA SSGTLLESFS GHQAPVTLVQ
     PYVSGDTQLL LSSSSSDVQL WDASSITGGP RHSFDGCKAA KFSNSGLQFA ALSCEASTKD
     VLLYDVQTCS PCDKLTDTVT SSRSNPYSLV HFSPCDTLIL WNGVLWDRRI PESVSRFDQF
     TDYGGGGFHP SRNEVIINSE VWDMRNFKLL RSVPSLDQTA ITFNSRGDVI YAMLRRNIED
     VMSAVHTRRV KHPLFAAFRT LDAINYSDIA TIPVDRCLLD FATEPTDSFL GLITMEDQED
     MFSSARMYEI GRRRPTDDDS DPDDDDETDD EDEDDEDEED DLDRILGLGV DDSDSGDDDL
     SSDDNEDSVS DFDEEGEILI DGLDGGFMGI IEGEDEDDDN GGDGEDDDDD GEMQDFMSSG
     EEDDYRDNIR SS
//
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