ID D7MB91_ARALL Unreviewed; 1872 AA.
AC D7MB91;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 24-JAN-2024, entry version 73.
DE SubName: Full=Transducin family protein {ECO:0000313|EMBL:EFH45601.1};
GN ORFNames=ARALYDRAFT_491627 {ECO:0000313|EMBL:EFH45601.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
CC -!- PATHWAY: Protein modification; protein ubiquitination.
CC {ECO:0000256|ARBA:ARBA00004906}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the VPRBP/DCAF1 family.
CC {ECO:0000256|ARBA:ARBA00008845}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; GL348719; EFH45601.1; -; Genomic_DNA.
DR RefSeq; XP_002869342.1; XM_002869296.1.
DR STRING; 81972.D7MB91; -.
DR EnsemblPlants; fgenesh2_kg.7__1060__AT4G31160.1; fgenesh2_kg.7__1060__AT4G31160.1; fgenesh2_kg.7__1060__AT4G31160.1.
DR Gramene; fgenesh2_kg.7__1060__AT4G31160.1; fgenesh2_kg.7__1060__AT4G31160.1; fgenesh2_kg.7__1060__AT4G31160.1.
DR eggNOG; KOG1832; Eukaryota.
DR HOGENOM; CLU_237244_0_0_1; -.
DR UniPathway; UPA00143; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0080008; C:Cul4-RING E3 ubiquitin ligase complex; IEA:EnsemblPlants.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants.
DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants.
DR GO; GO:0048366; P:leaf development; IEA:EnsemblPlants.
DR GO; GO:0016567; P:protein ubiquitination; IEA:UniProtKB-UniPathway.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR InterPro; IPR006594; LisH.
DR InterPro; IPR033270; VPRBP/DCAF1.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR13129:SF4; DDB1- AND CUL4-ASSOCIATED FACTOR 1; 1.
DR PANTHER; PTHR13129; VPRBP PROTEIN-RELATED; 1.
DR Pfam; PF08513; LisH; 1.
DR SMART; SM00667; LisH; 1.
DR SMART; SM00320; WD40; 3.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS50896; LISH; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW Ubl conjugation pathway {ECO:0000256|ARBA:ARBA00022786}.
FT REGION 1..53
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 316..372
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 888..930
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1163..1246
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1297..1362
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1751..1872
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 25..40
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 318..346
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 890..927
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1199..1246
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1303..1362
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1760..1785
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1792..1820
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1830..1858
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1872 AA; 203816 MW; 0AE50F09D99368F1 CRC64;
MDGQEHAEVP NQMVEDEQSV VAAEAITELA NSNNEANPEE GGQQEGEEES VEDELIAKAQ
KLMDDITSVA NNPNPNFLHA LSHLLESQES LFLEENGHFS NARGSHSSGK LCTLIRENDE
FFELISSTFL SENSYSTAVK AASARLLMNC SLTWMYPHVF DDAVTENFKN WVMEEAVKFP
GEDSGRKEAS DSEMLKTYST GLLALSLASR GQIVEDVLTS GLSAKLMHYL RVRVIGEPST
SRRDALHTTE TKHVSLKTKE EGRSRVRKVV DTVEGDHVFE TDSGREMGQT DVQSDGEFEI
DGREIFNVSG VVDCKIKPGD DNSGRDDPSR HRLNRSKSRG RGRVNEGATD TEVLLASPRS
GRPVVRDKDL SKFSDGRNGE DVTICLGKMK SGIMEIERED DDECFQGCII GTKNIIDLVK
RAVGAAETEA RAAHAPDDAA KAAGDAAAEL VKTAALEEFK SSGSEEAAVS AATRAAITVI
DAAEVSRNPT CVTSDQTTDV SEVSLPDIES LAQLQEKYCI QCLEILGEYV EVLGPVLHEK
GVDVCIMLLE RTSQCDDSST VSPLLPDVMK LICALAAHRK FAAMFVDRGG IQKLLAVPRV
SETFYGLSSC LYTIGSLQGI MERVCALPSD LIHQVVKLAI ELLDCSQDQA RKNSALFFAA
AFVFRAILDA FDAHDSLQKL LAILKDAASV RTGANSDRSA PEVMTSSEKQ MAFHTCFALR
QYFRAHLLLL VDSIRPSRSS RGGVRNVPNI RAAYKPLDIS NEAVDAIFHQ LQKDRKLGPT
FVRTQWPAVN NFLASSGHVT MLELCQTPPV DRYLHDLLQY AFGVLHIVTS IPDGRKAIAH
ATLSNNRAGI AVILDAANIS NSIVDPEIIQ PALNVLINLV CPPPSLSNKP PLAQNHQPVP
GQATTRPSTD VAVGTQSTGN APQTPVAPAS SGLVGDRRIF LGAGTGSAGL AAKLEQVYRQ
AREAVRGNDG IKILLKLLQP RIYVNPPATP DCLRALACRV LLGLARDDTI AQILTKLEIV
TNSGHATTLT ASDAATPTLR RIERAAIAAA TPITYDSKEL LLLIHEHLQA SGLGETASAL
LKEAQLTPLP SLASPSSIAY SSTQEMSTPL AQEQWPSGRA NSGFFTSKPK VCAHDEDPNS
RCNAAISAKK KHLASSTLEI PTPVAQQQWP SGRANSGFFP SIPRINALDE DPSSRGNAAP
SAKKKQLTFS PSFSLQSRKQ SFSHDAQPQS TQRINSSSNS DPAWADTSET AAELVLKNDL
DADAQFKTPI SFPRKRKLSE LRDPELSVPG KRINLGELGL RSPACPTTSS LRRNSTIAES
SGLQTPASAL DANQSGSSRL GQMTPASQLR LPSDPQPSNP ERLSLDSLVV QYLKHQHRQC
LAPITTLPPV SLLHPHVCPE PKRLLEAPLN ITGRLGTREL QSFYSGVHGN RRDRQFVFSR
FKSWRSFRDE TALFTCIALL GGTNHLAVGS HAGEIKIFEA SSGTLLESFS GHQAPVTLVQ
PYVSGDTQLL LSSSSSDVQL WDASSITGGP RHSFDGCKAA KFSNSGLQFA ALSCEASTKD
VLLYDVQTCS PCDKLTDTVT SSRSNPYSLV HFSPCDTLIL WNGVLWDRRI PESVSRFDQF
TDYGGGGFHP SRNEVIINSE VWDMRNFKLL RSVPSLDQTA ITFNSRGDVI YAMLRRNIED
VMSAVHTRRV KHPLFAAFRT LDAINYSDIA TIPVDRCLLD FATEPTDSFL GLITMEDQED
MFSSARMYEI GRRRPTDDDS DPDDDDETDD EDEDDEDEED DLDRILGLGV DDSDSGDDDL
SSDDNEDSVS DFDEEGEILI DGLDGGFMGI IEGEDEDDDN GGDGEDDDDD GEMQDFMSSG
EEDDYRDNIR SS
//