ID D7MKK3_ARALL Unreviewed; 510 AA.
AC D7MKK3;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 24-JAN-2024, entry version 62.
DE RecName: Full=MADS-box domain-containing protein {ECO:0000259|PROSITE:PS50066};
GN ORFNames=ARALYDRAFT_357809 {ECO:0000313|EMBL:EFH42367.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; GL348720; EFH42367.1; -; Genomic_DNA.
DR RefSeq; XP_002866108.1; XM_002866062.1.
DR AlphaFoldDB; D7MKK3; -.
DR STRING; 81972.D7MKK3; -.
DR EnsemblPlants; fgenesh1_pg.C_scaffold_8001596; fgenesh1_pg.C_scaffold_8001596; fgenesh1_pg.C_scaffold_8001596.
DR Gramene; fgenesh1_pg.C_scaffold_8001596; fgenesh1_pg.C_scaffold_8001596; fgenesh1_pg.C_scaffold_8001596.
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_534606_0_0_1; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000987; F:cis-regulatory region sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IEA:InterPro.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR CDD; cd00266; MADS_SRF_like; 1.
DR Gene3D; 3.40.1810.10; Transcription factor, MADS-box; 1.
DR InterPro; IPR033897; MADS_SRF-like.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR PANTHER; PTHR11945; MADS BOX PROTEIN; 1.
DR PANTHER; PTHR11945:SF176; MADS-BOX DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SRF-like; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 1..57
FT /note="MADS-box"
FT /evidence="ECO:0000259|PROSITE:PS50066"
SQ SEQUENCE 510 AA; 55027 MW; 5BCCBBC35C41C3C5 CRC64;
MVKMVKIMNE KTRITTYKKR KACLYKKASE FSTLCGVDTC LIVYGPSRAG DEMVAEPELW
PKDERKVREI ITKYRDTVSS NCTKTYTVQE CLEKNNTKEE KPKIAMEYPT WDKKLDKCSL
NDLYLVFMAV ENKIQEATNR NQTFPDTTCW SNDQLGLCGY NQQCFEQYQL FPLPTMEHNG
FSFFPFNNQM TSNTAEVASF SNVTEPMIAN GQNLFYGSCS DGPYGPVVQR TAYMEPIQWG
LGNSVFNNVK QFQDYPFRFA QVNDLEDSRN ISGVLAGVDG ILRVVIGDVG AISGVSAVTG
AWFDGAVAGD SVEVVGLIVG ADIGDFTGIV VGGETREVAG VETGVVAVVG EETGEVAGDK
TGEFKGDAMV RDVTGEVAGD ETGDFNGEEI VRDETGDVAG VKAGVRDGEA AGVNTRDFDG
DSTVRDGEIA GVITGDIKGD VMVRDVTGEV TGETTGYFDG VTNAGEETED FSGDFVGEVC
FVGGGSSGGF WITGGCKVGV RGDVDGEITR
//