ID D7MV64_ARALL Unreviewed; 650 AA.
AC D7MV64;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 08-NOV-2023, entry version 73.
DE RecName: Full=SET domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=ARALYDRAFT_332974 {ECO:0000313|EMBL:EFH39386.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE-ProRule:PRU00358}.
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DR EMBL; GL348721; EFH39386.1; -; Genomic_DNA.
DR RefSeq; XP_002863127.1; XM_002863081.1.
DR AlphaFoldDB; D7MV64; -.
DR STRING; 81972.D7MV64; -.
DR EnsemblPlants; fgenesh1_pm.C_scaffold_9000002; fgenesh1_pm.C_scaffold_9000002; fgenesh1_pm.C_scaffold_9000002.
DR GeneID; 9299204; -.
DR Gramene; fgenesh1_pm.C_scaffold_9000002; fgenesh1_pm.C_scaffold_9000002; fgenesh1_pm.C_scaffold_9000002.
DR KEGG; aly:9299204; -.
DR eggNOG; KOG1082; Eukaryota.
DR HOGENOM; CLU_004556_4_1_1; -.
DR OrthoDB; 5481936at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0005694; C:chromosome; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0042054; F:histone methyltransferase activity; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009294; P:DNA-mediated transformation; IEA:EnsemblPlants.
DR GO; GO:0080188; P:gene silencing by RNA-directed DNA methylation; IEA:EnsemblPlants.
DR CDD; cd10545; SET_AtSUVH-like; 1.
DR Gene3D; 2.170.270.10; SET domain; 1.
DR Gene3D; 2.30.280.10; SRA-YDG; 1.
DR InterPro; IPR025794; H3-K9-MeTrfase_plant.
DR InterPro; IPR007728; Pre-SET_dom.
DR InterPro; IPR015947; PUA-like_sf.
DR InterPro; IPR001214; SET_dom.
DR InterPro; IPR046341; SET_dom_sf.
DR InterPro; IPR036987; SRA-YDG_sf.
DR InterPro; IPR003105; SRA_YDG.
DR PANTHER; PTHR45660:SF3; HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH9; 1.
DR PANTHER; PTHR45660; HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR; 1.
DR Pfam; PF05033; Pre-SET; 1.
DR Pfam; PF02182; SAD_SRA; 1.
DR Pfam; PF00856; SET; 1.
DR SMART; SM00468; PreSET; 1.
DR SMART; SM00317; SET; 1.
DR SMART; SM00466; SRA; 1.
DR SUPFAM; SSF88697; PUA domain-like; 1.
DR SUPFAM; SSF82199; SET domain; 1.
DR PROSITE; PS50867; PRE_SET; 1.
DR PROSITE; PS51575; SAM_MT43_SUVAR39_2; 1.
DR PROSITE; PS50280; SET; 1.
DR PROSITE; PS51015; YDG; 1.
PE 4: Predicted;
KW Chromosome {ECO:0000256|ARBA:ARBA00022454};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|PROSITE-
KW ProRule:PRU00358}; Reference proteome {ECO:0000313|Proteomes:UP000008694}.
FT DOMAIN 205..352
FT /note="YDG"
FT /evidence="ECO:0000259|PROSITE:PS51015"
FT DOMAIN 432..490
FT /note="Pre-SET"
FT /evidence="ECO:0000259|PROSITE:PS50867"
FT DOMAIN 493..637
FT /note="SET"
FT /evidence="ECO:0000259|PROSITE:PS50280"
SQ SEQUENCE 650 AA; 72345 MW; CA27CD2F3AAB40A9 CRC64;
MGSSHIPLDP SLNPSPSLIP KLEPVTESTQ NLSFQLPNTN PQALISSPIS NFNEATNFSS
DYITVAETFR SAFAQRLKRH DDVTVLDSLT GAIVPVEENP DPEPIPVSYS TNDASPSVVV
TRRPKPQQRS SELVRITDVG PEGERQFREH VRKTRMIYDS LRMFLMMEEV KLNGFGGRKG
RPDSKAASMM KDCMLWLNRD KRIVGSIPGV QVGDIFFFRL ELCVMGLHGQ TQAGIDYLTG
SLSSNGEPIA TSVIVSGGYE DDDDQGDVIM YTGHGGQDKL GRQAEHQKLE GGNLAMERSM
YYGIEVRVIR GLKYENSVSS KVYVYDGLFR IVDSWFDVGK SGFGVFKYRL ERIEGQAEMG
SSILKLARTL KTNPLSVRPR GYISSDISNR KENVPVYLFN DIDNDQEPLY YEYLATTSFP
PGLFVQRSDS ASGCDCIKGC GSGCLCEAKN SGEFAYDYHG KLIRQKPLIH ECGAACRCPP
SCRNRVTQKG LRNRLEVFRS LETGWGVRSL DILHAGAFIC EYAGVALTRE QANILTMNGD
TLVYPARFSS ARWEAWGDLS QVLADFERPS YPEIPPVDFA MDVSKMRNVA CYISHSTDPN
VIVQLVLHDH NSLMFPRVML FAAENIPPMT ELSLDYGVAD DWTAKLAICN
//
