ID D7SHM1_VITVI Unreviewed; 514 AA.
AC D7SHM1;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 79.
DE RecName: Full=WD40 repeat-containing protein SMU1 {ECO:0000256|ARBA:ARBA00026184};
GN OrderedLocusNames=VIT_17s0000g08930 {ECO:0000313|EMBL:CBI14981.3};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CBI14981.3, ECO:0000313|Proteomes:UP000009183};
RN [1] {ECO:0000313|Proteomes:UP000009183}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX PubMed=17721507; DOI=10.1038/nature06148;
RG The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
CC -!- SUBCELLULAR LOCATION: Nucleus speckle {ECO:0000256|ARBA:ARBA00004324}.
CC -!- SIMILARITY: Belongs to the WD repeat SMU1 family.
CC {ECO:0000256|ARBA:ARBA00025801}.
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DR EMBL; FN594950; CBI14981.3; -; Genomic_DNA.
DR RefSeq; XP_002281533.1; XM_002281497.3.
DR AlphaFoldDB; D7SHM1; -.
DR STRING; 29760.D7SHM1; -.
DR PaxDb; 29760-VIT_17s0000g08930-t01; -.
DR EnsemblPlants; Vitvi17g00882_t001; Vitvi17g00882_P001; Vitvi17g00882.
DR GeneID; 100241550; -.
DR Gramene; Vitvi17g00882_t001; Vitvi17g00882_P001; Vitvi17g00882.
DR KEGG; vvi:100241550; -.
DR eggNOG; KOG0275; Eukaryota.
DR HOGENOM; CLU_000288_57_38_1; -.
DR InParanoid; D7SHM1; -.
DR OMA; MMKQQEP; -.
DR OrthoDB; 3893433at2759; -.
DR Proteomes; UP000009183; Chromosome 17.
DR ExpressionAtlas; D7SHM1; baseline and differential.
DR GO; GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
DR GO; GO:0071011; C:precatalytic spliceosome; IBA:GO_Central.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro.
DR GO; GO:0008380; P:RNA splicing; IBA:GO_Central.
DR CDD; cd00200; WD40; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR InterPro; IPR006595; CTLH_C.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR006594; LisH.
DR InterPro; IPR045184; SMU1.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR22848; WD40 REPEAT PROTEIN; 1.
DR PANTHER; PTHR22848:SF0; WD40 REPEAT-CONTAINING PROTEIN SMU1; 1.
DR Pfam; PF17814; LisH_TPL; 1.
DR Pfam; PF00400; WD40; 5.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00668; CTLH; 1.
DR SMART; SM00667; LisH; 1.
DR SMART; SM00320; WD40; 7.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS50897; CTLH; 1.
DR PROSITE; PS50896; LISH; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 1.
DR PROSITE; PS50082; WD_REPEATS_2; 5.
DR PROSITE; PS50294; WD_REPEATS_REGION; 3.
PE 3: Inferred from homology;
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Reference proteome {ECO:0000313|Proteomes:UP000009183};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}.
FT DOMAIN 42..94
FT /note="CTLH"
FT /evidence="ECO:0000259|PROSITE:PS50897"
FT REPEAT 223..243
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 261..302
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 304..345
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 346..387
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 481..514
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
SQ SEQUENCE 514 AA; 57954 MW; 3D875AD877DFCEAF CRC64;
MSSTLEIEAR DVIKIVLQFC KENSLHQTFQ TLQSECQVSL NTVDSLETFI ADINSGRWDA
ILPQVAQLKL PRKKLEDLYE QIVLEMIELR ELDTARAILR QTQAMGVMKQ EQPERYLRLE
HLLVRTYFDP HEAYQDSTKE KRRAQIAQAL AAEVSVVPPS RLMALIGQAL KWQQHQGLLP
PGTQFDLFRG TAAMKQDVDD MYPTTLGHTI KFGTKSHAEY ARFSPDGQFL VSCSVDGFIE
VWDHISGKLK KDLQYQADET FMMHDDAVLC VDFSRDSEML ASGSQDGKIK VWRIRTGQCL
RRLERAHSQG VTSLVFSRDG SQILSASFDS TARIHGLKSG KLLKEFRGHS SYVNDAIFTN
DGGRVVTASS DCTVKVWDVK TTDCLQTFKP PPPLRGGDAS VNGVHLFPKN TDHIIVCNRT
SSIYLMTLQG QVVKSFSSGK REGGDFVAAC VSPKGEWIYC VGEDRNIYCF SYQSGKLEHL
MKVHEKDVIG VTHHPHRNLV ATYSEDSTMK LWKP
//
