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Database: UniProt
Entry: D7SYP2_VITVI
LinkDB: D7SYP2_VITVI
Original site: D7SYP2_VITVI 
ID   D7SYP2_VITVI            Unreviewed;        88 AA.
AC   D7SYP2;
DT   10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT   10-AUG-2010, sequence version 1.
DT   24-JAN-2024, entry version 70.
DE   RecName: Full=Sm protein F {ECO:0000256|ARBA:ARBA00030144};
GN   ORFNames=VIT_00s0220g00030 {ECO:0000313|EMBL:CBI23345.3};
OS   Vitis vinifera (Grape).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; Vitales; Vitaceae; Viteae; Vitis.
OX   NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183};
RN   [1] {ECO:0000313|Proteomes:UP000009183}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX   PubMed=17721507; DOI=10.1038/nature06148;
RG   The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA   Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA   Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA   Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA   Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA   Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA   Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA   Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA   Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA   Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA   Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA   Wincker P.;
RT   "The grapevine genome sequence suggests ancestral hexaploidization in major
RT   angiosperm phyla.";
RL   Nature 449:463-467(2007).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC       ECO:0000256|PIRNR:PIRNR006609}.
CC   -!- SIMILARITY: Belongs to the snRNP Sm proteins family. SmF/LSm6
CC       subfamily. {ECO:0000256|PIRNR:PIRNR006609}.
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DR   EMBL; FN595254; CBI23345.3; -; Genomic_DNA.
DR   RefSeq; XP_002272246.1; XM_002272210.4.
DR   AlphaFoldDB; D7SYP2; -.
DR   SMR; D7SYP2; -.
DR   STRING; 29760.D7SYP2; -.
DR   PaxDb; 29760-VIT_00s0220g00030-t01; -.
DR   EnsemblPlants; Vitvi07g01252_t001; Vitvi07g01252_P001; Vitvi07g01252.
DR   GeneID; 100263985; -.
DR   Gramene; Vitvi07g01252_t001; Vitvi07g01252_P001; Vitvi07g01252.
DR   KEGG; vvi:100263985; -.
DR   eggNOG; KOG3482; Eukaryota.
DR   HOGENOM; CLU_076902_12_1_1; -.
DR   InParanoid; D7SYP2; -.
DR   OMA; HEYKGYL; -.
DR   OrthoDB; 20767at2759; -.
DR   Proteomes; UP000009183; Unassembled WGS sequence, unordered.
DR   GO; GO:0071013; C:catalytic step 2 spliceosome; IBA:GO_Central.
DR   GO; GO:0034715; C:pICln-Sm protein complex; IBA:GO_Central.
DR   GO; GO:0005685; C:U1 snRNP; IBA:GO_Central.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0000398; P:mRNA splicing, via spliceosome; IBA:GO_Central.
DR   GO; GO:0000387; P:spliceosomal snRNP assembly; IEA:InterPro.
DR   CDD; cd01722; Sm_F; 1.
DR   Gene3D; 2.30.30.100; -; 1.
DR   InterPro; IPR016487; Lsm6/sSmF.
DR   InterPro; IPR010920; LSM_dom_sf.
DR   InterPro; IPR047575; Sm.
DR   InterPro; IPR001163; Sm_dom_euk/arc.
DR   InterPro; IPR034100; Sm_F.
DR   PANTHER; PTHR11021:SF0; SMALL NUCLEAR RIBONUCLEOPROTEIN F; 1.
DR   PANTHER; PTHR11021; SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F; 1.
DR   Pfam; PF01423; LSM; 1.
DR   PIRSF; PIRSF006609; snRNP_SmF; 1.
DR   SMART; SM00651; Sm; 1.
DR   SUPFAM; SSF50182; Sm-like ribonucleoproteins; 1.
DR   PROSITE; PS52002; SM; 1.
PE   3: Inferred from homology;
KW   mRNA processing {ECO:0000256|PIRNR:PIRNR006609};
KW   mRNA splicing {ECO:0000256|ARBA:ARBA00023187,
KW   ECO:0000256|PIRNR:PIRNR006609};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|PIRNR:PIRNR006609};
KW   Reference proteome {ECO:0000313|Proteomes:UP000009183};
KW   Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274,
KW   ECO:0000256|PIRNR:PIRNR006609};
KW   RNA-binding {ECO:0000256|PIRNR:PIRNR006609};
KW   Spliceosome {ECO:0000256|ARBA:ARBA00022728, ECO:0000256|PIRNR:PIRNR006609}.
FT   DOMAIN          7..79
FT                   /note="Sm"
FT                   /evidence="ECO:0000259|PROSITE:PS52002"
SQ   SEQUENCE   88 AA;  9994 MW;  C0B893A1DC28577F CRC64;
     MATVPLNPKP FLNNLTGKPV IVKLKWGMEY KGYLVSVDSY MNLQLANSEE YIDGQFTGNL
     GEILIRCNNV LYLRGVPEDE EIEEADRD
//
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