ID D8P9Z3_9BACT Unreviewed; 598 AA.
AC D8P9Z3;
DT 05-OCT-2010, integrated into UniProtKB/TrEMBL.
DT 05-OCT-2010, sequence version 1.
DT 24-JAN-2024, entry version 78.
DE SubName: Full=Sigma-54 dependent response regulator {ECO:0000313|EMBL:CBK40052.1};
GN ORFNames=NIDE0271 {ECO:0000313|EMBL:CBK40052.1};
OS Nitrospira defluvii.
OC Bacteria; Nitrospirota; Nitrospiria; Nitrospirales; Nitrospiraceae;
OC Nitrospira.
OX NCBI_TaxID=330214 {ECO:0000313|EMBL:CBK40052.1, ECO:0000313|Proteomes:UP000001660};
RN [1] {ECO:0000313|EMBL:CBK40052.1, ECO:0000313|Proteomes:UP000001660}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=20624973; DOI=10.1073/pnas.1003860107;
RA Lucker S., Wagner M., Maixner F., Pelletier E., Koch H., Vacherie B.,
RA Rattei T., Sinninghe Damste J., Spieck E., Le Paslier D., Daims H.;
RT "A Nitrospira metagenome illuminates the physiology and evolution of
RT globally important nitrite-oxidizing bacteria.";
RL Proc. Natl. Acad. Sci. U.S.A. 0:13479-13484(2010).
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DR EMBL; FP929003; CBK40052.1; -; Genomic_DNA.
DR AlphaFoldDB; D8P9Z3; -.
DR STRING; 330214.NIDE0271; -.
DR KEGG; nde:NIDE0271; -.
DR eggNOG; COG3829; Bacteria.
DR HOGENOM; CLU_000445_8_1_0; -.
DR OrthoDB; 9804019at2; -.
DR Proteomes; UP000001660; Chromosome.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000001660};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 295..524
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 598 AA; 66876 MW; 15E83DA7E542CEA7 CRC64;
MASNTRPSAP DLLCTDLLQR FQFAILEHVT GADFRIIGHP PAWLFTLYPD ARNNLPLSID
ARTPVLQNFL ADAADAWQTD GDDIAHSGFW SEQPEAEEPR HFHAMALRHG PSRLLLIQHS
TAAYDQQATL LQRARDQVLR QHEHNRGHQR AQHELTTKLV DMERSRDDVA VILQQLGLAT
LLIDQEGQVR FLSASAARLL DTPATGGPNG LLWETLLPLT KPDRLALQSM LQQPASRRER
VQCHVETQAG RHLWLEIELQ DDPRDTGTKI MFLHDMTDVH HLRRLLELKA HYHDLVGKSR
GMTQIYEQIQ DLARVDSTVL IEGETGTGKE LVARALHQAS ARHKGPFIAA NCAGLTDSLL
GSQLFGHKKG AFTGAIDDQQ GLFEAAQGGV LFLDEIGDIP HNVQTNLLRV LQEKEVTRLG
ETRPRKVNVR VLTATHHNLS QDVAKGTFRA DLLYRIRVSR IQLPPLRDRK EDIPLLVASF
LTEGRASMGK IIHRASPAAM AALMEYHWPG NVRELKSTIE CAMIHCKGDT LEATDLPPEL
RQGPTDSPCE VVPHGDERSR FVAALGQARG NRTKAARLLG MSRATFYRRL SELDLPTR
//
