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Database: UniProt
Entry: D8S4F9_SELML
LinkDB: D8S4F9_SELML
Original site: D8S4F9_SELML 
ID   D8S4F9_SELML            Unreviewed;      1728 AA.
AC   D8S4F9;
DT   05-OCT-2010, integrated into UniProtKB/TrEMBL.
DT   05-OCT-2010, sequence version 1.
DT   31-JUL-2019, entry version 61.
DE   SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFJ20934.1};
GN   ORFNames=SELMODRAFT_108314 {ECO:0000313|EMBL:EFJ20934.1};
OS   Selaginella moellendorffii (Spikemoss).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella.
OX   NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514};
RN   [1] {ECO:0000313|EMBL:EFJ20934.1, ECO:0000313|Proteomes:UP000001514}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=21551031; DOI=10.1126/science.1203810;
RA   Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M.,
RA   dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A.,
RA   Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L.,
RA   Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M.,
RA   DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L.,
RA   Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L.,
RA   Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y.,
RA   Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U.,
RA   Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E.,
RA   Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S.,
RA   Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M.,
RA   Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B.,
RA   Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y.,
RA   Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N.,
RA   Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N.,
RA   Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P.,
RA   Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L.,
RA   Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R.,
RA   Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S.,
RA   Rokhsar D., Grigoriev I.V.;
RT   "The Selaginella genome identifies genetic changes associated with the
RT   evolution of vascular plants.";
RL   Science 332:960-963(2011).
CC   -!- SIMILARITY: Belongs to the helicase family. Dicer subfamily.
CC       {ECO:0000256|PROSITE-ProRule:PRU00657}.
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DR   EMBL; GL377601; EFJ20934.1; -; Genomic_DNA.
DR   RefSeq; XP_002978277.1; XM_002978231.1.
DR   STRING; 88036.EFJ20934; -.
DR   EnsemblPlants; EFJ20934; EFJ20934; SELMODRAFT_108314.
DR   GeneID; 9658198; -.
DR   Gramene; EFJ20934; EFJ20934; SELMODRAFT_108314.
DR   KEGG; smo:SELMODRAFT_108314; -.
DR   eggNOG; KOG0701; Eukaryota.
DR   eggNOG; COG0571; LUCA.
DR   eggNOG; COG1111; LUCA.
DR   InParanoid; D8S4F9; -.
DR   KO; K11592; -.
DR   OMA; FNMYVQT; -.
DR   OrthoDB; 1337630at2759; -.
DR   Proteomes; UP000001514; Unassembled WGS sequence.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0004525; F:ribonuclease III activity; IEA:InterPro.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.
DR   GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR   CDD; cd00048; DSRM; 1.
DR   CDD; cd00593; RIBOc; 2.
DR   Gene3D; 1.10.1520.10; -; 1.
DR   Gene3D; 3.30.160.380; -; 1.
DR   InterPro; IPR038248; Dicer_dimer_sf.
DR   InterPro; IPR005034; Dicer_dimerisation_dom.
DR   InterPro; IPR014720; dsRBD_dom.
DR   InterPro; IPR006935; Helicase/UvrB_N.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR003100; PAZ_dom.
DR   InterPro; IPR036085; PAZ_dom_sf.
DR   InterPro; IPR000999; RNase_III_dom.
DR   InterPro; IPR036389; RNase_III_sf.
DR   Pfam; PF03368; Dicer_dimer; 1.
DR   Pfam; PF00035; dsrm; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   Pfam; PF02170; PAZ; 1.
DR   Pfam; PF04851; ResIII; 1.
DR   Pfam; PF00636; Ribonuclease_3; 2.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00358; DSRM; 2.
DR   SMART; SM00490; HELICc; 1.
DR   SMART; SM00949; PAZ; 1.
DR   SMART; SM00535; RIBOc; 2.
DR   SUPFAM; SSF101690; SSF101690; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   SUPFAM; SSF69065; SSF69065; 2.
DR   PROSITE; PS51327; DICER_DSRBF; 1.
DR   PROSITE; PS50137; DS_RBD; 2.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS50821; PAZ; 1.
DR   PROSITE; PS00517; RNASE_3_1; 1.
DR   PROSITE; PS50142; RNASE_3_2; 2.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001514};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001514};
KW   RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00266};
KW   RNA-mediated gene silencing {ECO:0000256|SAAS:SAAS00703041}.
FT   DOMAIN      103    277       Helicase ATP-binding.
FT                                {ECO:0000259|PROSITE:PS51192}.
FT   DOMAIN      487    647       Helicase C-terminal.
FT                                {ECO:0000259|PROSITE:PS51194}.
FT   DOMAIN      673    767       Dicer dsRNA-binding fold.
FT                                {ECO:0000259|PROSITE:PS51327}.
FT   DOMAIN     1025   1133       PAZ. {ECO:0000259|PROSITE:PS50821}.
FT   DOMAIN     1176   1343       RNase III. {ECO:0000259|PROSITE:PS50142}.
FT   DOMAIN     1384   1532       RNase III. {ECO:0000259|PROSITE:PS50142}.
FT   DOMAIN     1558   1621       DRBM. {ECO:0000259|PROSITE:PS50137}.
FT   DOMAIN     1643   1718       DRBM. {ECO:0000259|PROSITE:PS50137}.
FT   REGION        1     47       Disordered. {ECO:0000256|SAM:MobiDB-
FT                                lite}.
FT   REGION       67     86       Disordered. {ECO:0000256|SAM:MobiDB-
FT                                lite}.
FT   REGION      758    782       Disordered. {ECO:0000256|SAM:MobiDB-
FT                                lite}.
FT   REGION     1278   1312       Disordered. {ECO:0000256|SAM:MobiDB-
FT                                lite}.
FT   COILED      315    335       {ECO:0000256|SAM:Coils}.
FT   COILED     1625   1645       {ECO:0000256|SAM:Coils}.
FT   COMPBIAS     20     47       Polyampholyte. {ECO:0000256|SAM:MobiDB-
FT                                lite}.
FT   COMPBIAS   1278   1300       Polyampholyte. {ECO:0000256|SAM:MobiDB-
FT                                lite}.
SQ   SEQUENCE   1728 AA;  193669 MW;  7358BBFEE993BBA3 CRC64;
     MEPLDRRRKP AKRVCYENKT RRRHGGCKRE RERDPEEEGG REKRAYLEKD ADGRNVLKFG
     IRVPAARGGA GPVTEPSTQN GSAGKAGKEK VCVEQARAYQ LEVLSQAEEG NTIAFLETGA
     GKTLIAVLLM KRKAELLQRK ILTVFLVPKV PLVYQQAEVI RERTNFNVGH YCGEMVQDFW
     DSKRWQREFQ SKEVLVMTAQ ILLNILRHSI VRMEDIDLLI LDECHHAVKK HPYSLVMSEF
     YHLAPKEKRP KIFGMTASPV NLKGVSNQED CAVKIRNLET KLDSVVCTIR DRKELEKHVP
     MPSETVVEYD KAAVLWSLRE KIKQMKEQVE EACSASSKRT KWQFMGARDA GASDELHFVY
     GVAERKESDG AANLLQKLRS IIFCLDELGQ WCAYKVASSS LGNLRHDERT ADVKYQELYL
     TKIVDMLKCD LQQGAASSSK LEAVHGDVEE GEVIDTNSLS GGEHFDEVLG AAVADKKVTP
     KVQSLIQILR KYEHVEDFRA IIFVDRVVAA LTLPCVLSEL PSLKYVRSGS LVGHNNSQDV
     STRHMHDSLS KFRDGSLNVL VATSVAEEGL DIRQCNVVVR FDLAKTVLAY IQSRGRARKP
     GSDYILMLEK GNKVHQSFLR NARNSEETLR KEATERTKLD PWTEAAIVAS LEDGKGETYQ
     VPSTGAMVTL NSAVGLIHFY CSQLPSDRYS ILKPEFVLTK HSTGDVVYFS CKLRLPSNAP
     VESFDGPVCS TMKGAQQAVC LEACKKLHEM AAFTDMLLPD TGTPDKSDKG EDNETTDPIP
     GTARYREYFP EGIADFLKGD WILNTNYLLS TSLYMYIIQY SNVGFSTDPL VTQTSDFAVL
     FGREMDPEVL TASVDLFVAR TLTTQASLVF SGVHHITSSE LTLLKAFHVR LMSIVLDVDV
     EPASTPWDSN KAYLFVPLTS SCTKQIDWAL MNKVLGSHAW SSPLQRARPD VFLGTNERAL
     GGDRREYGFS KLRSNGVQKH PTYGIRGAVA EFDVIKASGI APLREKLEPE GRQLLLADGY
     ANMDEMDGKL VTAAHSGKRF YVESVMREMT AESPFPRKEG YLGSVEYSSY ADYYEQKYGV
     RLHCRHQPML RCRGVSHCKN LLSPRFKLLE SSEELSDKTY YVMLPPEICL VHPLPGCLVR
     GAQRLPSVMK RVESILLAVQ LKHEIGFPIP AAKVLEALTA ASCQETFSYE RAELLGDAYL
     KWVVSRRLFI KHPRKHEGQL TRMRQQTVSN MVLYEFAISK SLQSYIQSDR FAPSRWAAPG
     VPPVFDEDLK DANLDNEAAE VPKANEHEER STKSSGEEEV LDDSTSLEDG EAEWDSSSYR
     VLSSKTLADV VEALIGVYYV EGGTKAAAHF MNWINIPIDY DEAEANAARA GCSVPDSVMN
     SIDFEKLELA IGYKFQMKSV LVEAISHASR PSAGVPCYQR LEFVGDAVLD HLITRYLFFR
     YQDLPPGRLT DLRAAAVNNE NFARISVKHS FHLHLRHGSS ALEAQIKDFV KDIQSELDKP
     GINSFGIGDF KAPKVLGDIL ESIAGAIFLD TGLAADEVWK VFERLLEPMV TPDTLPVHPV
     RELQERCQQQ AEGLEYRASR EGSIATVEVF VDGVQIGCAQ NTQKKMAQKL AARNALAALK
     ERDSLEEESN KVTKMENDKA NAFTRQTLND ICLQRQWPMP QYRLLSESGP AHAKRFTYTV
     RVNTRERGWT DECEGQAMPS MKKAKDSAAL VLLEVLKQWD DIKAPLKP
//
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